Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 3.7e-178 628.2 349 100.0
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 2.7e-128 462.6 353 74.5
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.8e-125 452.6 351 73.2
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.7e-122 443.4 353 72.8
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 2.2e-122 443.0 353 71.4
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.3e-122 441.4 353 72.8
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.8e-113 413.3 353 66.0
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 6.6e-111 404.8 352 65.6
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 5.2e-108 395.2 353 66.3
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 9.8e-107 391.0 353 64.0
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.7e-106 389.0 353 65.7
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-105 387.5 353 63.7
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.4e-105 387.1 353 63.7
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.4e-105 387.1 351 63.5
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.4e-105 387.1 350 64.0
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 4.1e-105 385.6 353 62.0
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.6e-104 383.6 353 63.7
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 3.9e-103 379.0 353 61.5
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 5.0e-103 378.6 350 62.6
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.5e-102 377.1 353 63.2
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 3.3e-102 375.9 353 64.9
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.3e-102 375.9 356 63.5
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.6e-102 375.2 364 62.9
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 7.3e-102 374.8 350 62.9
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.2e-101 374.0 349 63.0
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.2e-101 374.0 353 64.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.8e-101 372.9 353 61.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.8e-101 372.9 353 60.3
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.3e-100 369.8 353 62.6
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 4.0e-100 369.0 353 62.6
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 4.0e-100 369.0 353 62.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 8.9e-100 367.9 353 61.8
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 8.9e-100 367.9 352 61.9
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 2.0e-99 366.7 352 62.5
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.4e-99 365.9 352 61.9
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 4.4e-99 365.5 341 62.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 5.8e-99 365.2 353 60.9
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 7.5e-99 364.8 353 61.2
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 8.3e-98 361.3 355 62.3
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.9e-97 360.1 355 60.0
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.2e-97 359.4 353 59.5
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 9.2e-97 357.8 356 59.8
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 1.2e-96 357.5 352 60.8
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.7e-95 353.6 350 62.6
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 6.6e-95 351.7 362 58.6
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 8.6e-95 351.3 358 58.4
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 8.6e-95 351.3 352 60.2
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.5e-94 349.7 352 60.5
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 5.6e-94 348.6 350 58.6
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 5.6e-94 348.6 344 60.8
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 8.1e-93 344.7 355 58.6
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.4e-92 344.0 352 59.7
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 3.1e-92 342.8 366 59.3
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 8.9e-92 341.3 352 59.1
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 8.9e-92 341.3 355 58.6
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-91 340.5 353 61.2
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-91 340.5 353 61.2
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.5e-91 340.5 366 57.7
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 2.0e-91 340.1 353 58.6
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.0e-91 340.1 354 57.9
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 2.6e-91 339.7 352 59.4
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.4e-91 339.0 353 59.2
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.3e-90 337.4 352 57.7
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.3e-90 337.4 351 57.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.2e-90 336.7 351 58.4
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 2.9e-90 336.3 352 58.2
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.1e-89 334.3 351 58.1
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.9e-89 333.6 352 58.0
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 2.4e-89 333.2 352 58.5
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 3.2e-89 332.8 352 58.2
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 4.1e-89 332.4 402 53.7
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.2e-88 330.9 352 58.0
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.2e-88 330.9 352 58.0
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.1e-88 330.1 352 58.2
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 4.6e-88 328.9 352 58.2
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 4.6e-88 328.9 352 58.5
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 7.8e-88 328.2 352 57.7
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 7.8e-88 328.2 351 57.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 7.8e-88 328.2 351 57.5
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.0e-87 327.8 352 58.0
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.7e-87 327.0 351 57.3
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 9.6e-86 321.2 353 55.5
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 1.2e-85 320.9 334 56.9
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 6.2e-85 318.5 350 60.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.1e-84 317.8 423 49.2
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 9.0e-84 314.7 374 54.3
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.2e-83 314.3 353 57.5
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.7e-82 310.5 346 56.1
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 4.9e-82 308.9 341 56.0
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 3.2e-81 306.2 355 54.6
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 3.2e-81 306.2 350 54.9
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 9.3e-81 304.7 344 54.1
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 3.5e-80 302.8 382 51.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.3e-79 300.8 293 60.4
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 8.7e-79 298.1 335 55.2
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 2.0e-75 287.0 348 51.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.4e-73 278.9 261 64.0
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.2e-66 256.9 355 50.7
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.1e-61 240.4 235 60.4
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 1.1e-57 228.0 329 45.9
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.9e-55 219.5 202 61.9
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.5e-54 216.9 228 56.6
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 3.4e-51 206.5 197 60.4
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 7.6e-51 205.3 231 55.8
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.1e-48 197.2 142 72.5
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.3e-45 188.0 339 42.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 5.3e-44 182.6 187 58.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.6e-38 163.7 204 51.0
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 5.7e-38 162.5 379 35.6
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.2e-37 160.6 233 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.1e-36 158.3 294 38.4
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 6.9e-36 155.6 236 44.9
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.2e-33 146.7 160 58.1
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 3.2e-33 146.7 97 76.3
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.7e-30 136.0 281 38.8
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 3.7e-29 133.3 227 42.7
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 4.8e-29 132.9 116 62.9
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.2e-26 124.0 225 42.7
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.3e-23 114.0 371 30.7
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.1e-20 105.1 271 36.9
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 3.1e-20 103.6 95 58.9
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.7e-18 97.8 312 32.7
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 8.5e-18 95.5 101 57.4
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.2e-15 86.3 68 61.8
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.8e-13 79.7 98 45.9
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 4.1e-12 76.6 123 45.5
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 7.0e-12 75.9 82 59.8
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-11 74.7 71 54.9
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 5.9e-11 72.8 213 33.8
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.2e-08 65.1 85 44.7
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.4e-06 57.0 101 39.6


User provided reference genes

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