Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 0.0e+00 1202.2 599 100.0
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 7.7e-152 541.6 499 60.1
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.4e-145 520.8 571 54.3
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.6e-128 464.2 546 50.5
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 6.6e-127 458.8 537 51.0
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.3e-124 450.3 551 50.3
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.0e-123 447.2 547 49.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 2.4e-121 440.3 559 48.7
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 2.7e-120 436.8 539 49.0
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 4.7e-117 426.0 552 48.9
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 1.8e-116 424.1 537 48.2
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 3.4e-115 419.9 441 53.5
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 5.8e-115 419.1 449 52.6
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 4.9e-114 416.0 538 47.6
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 4.9e-114 416.0 546 46.9
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 4.1e-113 412.9 521 48.4
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 2.1e-112 410.6 551 45.6
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 5.1e-111 406.0 569 46.0
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.5e-110 404.4 553 45.2
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.9e-110 404.1 557 47.2
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 2.5e-110 403.7 540 46.1
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.1e-109 400.6 539 47.5
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 4.7e-109 399.4 455 50.8
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.8e-108 397.5 576 46.2
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.4e-108 397.1 558 44.8
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 4.0e-108 396.4 483 48.7
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 6.8e-108 395.6 560 44.8
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 7.6e-107 392.1 574 46.3
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.8e-106 389.8 576 43.8
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 8.4e-106 388.7 582 44.2
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.1e-105 388.3 645 42.0
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 5.4e-105 386.0 554 44.4
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 5.4e-105 386.0 547 46.4
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 6.0e-104 382.5 487 48.5
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.3e-103 381.3 545 46.8
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 6.6e-103 379.0 574 44.4
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.1e-102 378.3 472 49.8
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 4.3e-102 376.3 533 46.2
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.3e-101 374.8 416 52.2
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 2.8e-101 373.6 486 47.7
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 4.8e-101 372.9 496 48.4
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 2.4e-100 370.5 619 40.9
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 4.0e-100 369.8 532 46.1
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 9.0e-100 368.6 563 44.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.2e-99 368.2 563 44.4
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 4.4e-99 366.3 433 49.7
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 7.6e-99 365.5 591 43.3
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.3e-98 364.8 413 50.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 2.9e-98 363.6 490 48.2
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.8e-98 363.2 449 50.8
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 6.4e-98 362.5 397 53.1
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 6.4e-98 362.5 471 49.0
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 1.1e-97 361.7 598 42.5
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.4e-97 361.3 506 45.5
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 1.2e-96 358.2 598 42.5
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 6.0e-96 355.9 534 43.4
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.0e-95 355.1 563 43.9
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.3e-95 354.8 463 45.8
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 2.3e-95 354.0 550 43.8
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 1.5e-94 351.3 559 43.3
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.9e-94 350.9 547 43.3
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.3e-93 348.2 536 44.0
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.8e-93 347.1 567 42.5
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.4e-92 344.7 402 50.5
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 2.4e-92 344.0 532 41.9
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.1e-92 343.6 536 43.5
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 4.0e-92 343.2 458 48.5
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 9.0e-92 342.0 437 49.0
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 5.8e-91 339.3 422 50.5
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 1.3e-90 338.2 480 43.8
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.7e-90 337.8 468 46.2
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.9e-90 337.0 537 41.2
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 6.4e-90 335.9 494 46.2
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 3.2e-89 333.6 522 42.0
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 7.1e-89 332.4 485 45.4
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 3.5e-88 330.1 492 46.7
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 4.6e-88 329.7 510 41.6
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 6.0e-88 329.3 696 36.1
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.3e-87 328.2 443 48.1
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 7.4e-86 322.4 541 42.5
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 6.2e-85 319.3 527 42.3
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 8.1e-85 318.9 417 46.5
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.8e-84 317.8 528 42.6
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 4.0e-84 316.6 486 44.9
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 5.3e-84 316.2 517 42.6
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 9.0e-84 315.5 501 43.3
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 9.0e-84 315.5 492 42.5
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.5e-83 314.7 473 45.0
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.6e-83 313.9 514 41.4
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 3.4e-83 313.5 534 41.9
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 2.9e-82 310.5 385 48.6
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.1e-81 308.5 518 43.2
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.9e-81 307.8 402 46.5
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 3.2e-81 307.0 518 42.1
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.2e-81 306.6 416 45.4
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 5.5e-81 306.2 349 51.0
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.2e-80 305.1 457 44.2
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 6.0e-80 302.8 496 41.9
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 6.0e-80 302.8 401 47.1
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.0e-79 302.0 484 42.8
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 1.3e-79 301.6 414 46.9
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.3e-79 301.6 484 42.8
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 1.3e-79 301.6 414 46.9
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 6.7e-79 299.3 554 38.8
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 2.5e-78 297.4 560 40.4
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 2.8e-77 293.9 390 46.9
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 4.8e-77 293.1 395 46.1
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.4e-76 291.6 462 43.5
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 3.1e-76 290.4 394 45.9
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 4.1e-76 290.0 393 46.1
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 4.1e-76 290.0 393 46.1
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 9.0e-76 288.9 390 46.2
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.5e-75 288.1 367 47.1
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 2.6e-75 287.3 408 44.1
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 3.4e-75 287.0 570 36.3
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.9e-74 283.9 432 44.0
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.9e-74 283.9 458 42.6
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.8e-74 283.5 410 44.1
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.4e-73 281.6 389 45.2
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 5.5e-73 279.6 347 48.7
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 3.5e-72 276.9 413 43.3
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.5e-70 271.6 471 42.0
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.3e-70 270.0 487 40.2
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 1.4e-68 265.0 364 45.6
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.4e-68 264.2 358 46.6
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 5.3e-68 263.1 275 53.8
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.2e-66 257.7 351 47.0
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 5.0e-66 256.5 326 45.4
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.7e-61 241.5 417 41.7
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 5.3e-60 236.5 235 54.9
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.2e-59 235.3 340 42.4
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.0e-58 232.3 262 50.8
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.4e-57 228.4 306 45.8
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.4e-55 221.9 537 34.8
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.3e-53 213.0 364 43.1
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.5e-49 201.1 275 46.9
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.0e-47 194.1 306 40.5
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 4.4e-46 190.3 217 52.1
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 3.2e-41 174.1 153 59.5
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 9.4e-41 172.6 190 50.5
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 7.2e-33 146.4 355 33.0
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 1.4e-28 132.1 189 47.1
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 4.1e-28 130.6 167 46.7
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.2e-24 119.0 404 29.5
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 8.9e-23 112.8 201 37.3
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 1.3e-21 109.0 272 33.5
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 3.5e-19 100.9 223 35.9
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 6.6e-18 96.7 393 29.5
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 7.5e-14 83.2 220 32.7
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 9.5e-09 66.2 80 47.5
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 4.0e-07 60.8 91 42.9


User provided reference genes

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