Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41650 Striga asiatica HOM05D002378 ORTHO05D002936 6.7e-54 213.8 108 100.0
MSTRG.23823 Avicennia marina HOM05D002378 ORTHO05D002936 2.2e-33 145.6 103 74.8
SalBow1G2456 Salvia bowleyana HOM05D002378 ORTHO05D002936 2.1e-31 139.0 104 73.1
unitig_62.g23398 Utricularia gibba HOM05D002378 ORTHO05D002936 8.8e-30 133.7 100 70.0
Migut.K00860 Erythranthe guttata HOM05D002378 ORTHO05D002936 1.9e-29 132.5 101 72.3
Oeu033431.1 Olea europaea HOM05D002378 ORTHO05D002936 1.3e-28 129.8 100 70.0
SGA_v2.0_scaffold150G36625 Striga asiatica HOM05D002378 ORTHO05D002936 2.8e-28 128.6 97 70.1
Nitab4.5_0009272g0020 Nicotiana tabacum HOM05D002378 ORTHO05D002936 4.1e-27 124.8 100 72.0
Lsat_1_v5_gn_8_115661 Lactuca sativa HOM05D002378 ORTHO05D002936 3.4e-26 121.7 107 64.5
Cc07_g05060 Coffea canephora HOM05D002378 ORTHO05D002936 1.3e-25 119.8 105 66.7
PGSC0003DMG401010047 Solanum tuberosum HOM05D002378 ORTHO05D002936 2.2e-25 119.0 103 68.0
MSTRG.15418 Avicennia marina HOM05D002378 ORTHO05D002936 1.1e-24 116.7 95 64.2
Migut.H00530 Erythranthe guttata HOM05D002378 ORTHO05D002936 2.5e-24 115.5 103 64.1
CSS0031813 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 3.2e-24 115.2 104 67.3
CSS0027164 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 9.4e-24 113.6 104 66.3
Dinv34855 Davidia involucrata HOM05D002378 ORTHO05D002936 2.1e-23 112.5 105 67.6
Solyc02g089810.3 Solanum lycopersicum HOM05D002378 ORTHO05D002936 2.3e-22 109.0 100 63.0
Sopen02g034500 Solanum pennellii HOM05D002378 ORTHO05D002936 2.3e-22 109.0 100 63.0
Hund16116 Selenicereus undatus HOM05D002378 ORTHO05D002936 1.5e-21 106.3 108 62.0
Haze_14115 Corylus avellana HOM05D002378 ORTHO05D002936 8.2e-20 100.5 111 62.2
HanXRQChr15g0486631 Helianthus annuus HOM05D002378 ORTHO05D002936 1.4e-19 99.8 105 58.1
Haze_14121 Corylus avellana HOM05D002378 ORTHO05D002936 2.4e-19 99.0 111 61.3
MBI16_g23769_MAGBIO Magnolia biondii HOM05D002378 ORTHO05D002936 2.4e-19 99.0 100 60.0
Peaxi162Scf01056g00251 Petunia axillaris HOM05D002378 ORTHO05D002936 2.4e-19 99.0 101 60.4
Actinidia26290 Actinidia chinensis HOM05D002378 ORTHO05D002936 4.1e-19 98.2 98 64.3
Manes.02G066200 Manihot esculenta HOM05D002378 ORTHO05D002936 4.1e-19 98.2 106 59.4
Cfa007954 Carpinus fangiana HOM05D002378 ORTHO05D002936 5.3e-19 97.8 110 60.9
PGR004G1585 Punica granatum HOM05D002378 ORTHO05D002936 5.3e-19 97.8 99 61.6
SGA_v2.0_scaffold62G21546 Striga asiatica HOM05D002378 ORTHO05D002936 9.1e-19 97.1 98 58.2
Ah.10g037500 Amaranthus hybridus HOM05D002378 ORTHO05D002936 2.6e-18 95.5 104 56.7
Hma1.2p1_0550F.1_g177190 Hydrangea macrophylla HOM05D002378 ORTHO05D002936 3.4e-18 95.1 103 57.3
FvH4_6g45430 Fragaria vesca HOM05D002378 ORTHO05D002936 4.5e-18 94.7 105 57.1
TAR629G0462 Trochodendron aralioides HOM05D002378 ORTHO05D002936 4.5e-18 94.7 109 57.8
Oeu049328.2 Olea europaea HOM05D002378 ORTHO05D002936 5.9e-18 94.4 102 57.8
FAN09G2739 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.0e-17 93.6 105 58.1
QL02p052949 Quercus lobata HOM05D002378 ORTHO05D002936 1.0e-17 93.6 113 55.8
FAN14G4540 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.3e-17 93.2 105 56.2
Nn4g23696 Nelumbo nucifera HOM05D002378 ORTHO05D002936 1.3e-17 93.2 108 55.6
Dinv38595 Davidia involucrata HOM05D002378 ORTHO05D002936 1.7e-17 92.8 110 55.5
Oeu025116.2 Olea europaea HOM05D002378 ORTHO05D002936 1.7e-17 92.8 101 57.4
CiPaw.03G058900 Carya illinoinensis HOM05D002378 ORTHO05D002936 2.2e-17 92.4 110 56.4
RcHm_v2.0_Chr2g0163261 Rosa chinensis HOM05D002378 ORTHO05D002936 3.8e-17 91.7 93 61.3
SGA_v2.0_scaffold10G05138 Striga asiatica HOM05D002378 ORTHO05D002936 3.8e-17 91.7 98 57.1
Phvul.008G020500 Phaseolus vulgaris HOM05D002378 ORTHO05D002936 6.5e-17 90.9 96 57.3
Ah.16g102060 Amaranthus hybridus HOM05D002378 ORTHO05D002936 1.1e-16 90.1 103 54.4
Cpa.g.sc818.2 Carica papaya HOM05D002378 ORTHO05D002936 1.1e-16 90.1 92 59.8
FAN05G2971 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.1e-16 90.1 97 57.7
VMungo1383G1609 Vigna mungo HOM05D002378 ORTHO05D002936 1.4e-16 89.7 100 56.0
DCAR_011340 Daucus carota HOM05D002378 ORTHO05D002936 2.5e-16 89.0 97 56.7
MD14G1221000 Malus domestica HOM05D002378 ORTHO05D002936 7.2e-16 87.4 101 54.5
Prupe.3G240400 Prunus persica HOM05D002378 ORTHO05D002936 7.2e-16 87.4 99 58.6
Rhsim08G0079800 Rhododendron simsii HOM05D002378 ORTHO05D002936 7.2e-16 87.4 104 58.7
AUR62014543 Chenopodium quinoa HOM05D002378 ORTHO05D002936 1.2e-15 86.7 106 50.9
PSO478G4524 Papaver somniferum HOM05D002378 ORTHO05D002936 1.2e-15 86.7 107 56.1
FAN02G3097 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.6e-15 86.3 99 56.6
FAN08G3159 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.6e-15 86.3 103 56.3
Aqoxy3G03892 Aquilegia oxysepala HOM05D002378 ORTHO05D002936 2.1e-15 85.9 104 54.8
MD06G1210100 Malus domestica HOM05D002378 ORTHO05D002936 2.1e-15 85.9 101 54.5
FvH4_5g12800 Fragaria vesca HOM05D002378 ORTHO05D002936 3.6e-15 85.1 103 55.3
FAN18G2406 Fragaria x ananassa HOM05D002378 ORTHO05D002936 3.6e-15 85.1 103 55.3
AUR62008960 Chenopodium quinoa HOM05D002378 ORTHO05D002936 4.7e-15 84.7 106 50.0
FAN18G2445 Fragaria x ananassa HOM05D002378 ORTHO05D002936 6.1e-15 84.3 103 55.3
TAR371G0108 Trochodendron aralioides HOM05D002378 ORTHO05D002936 6.1e-15 84.3 109 56.0
unitig_899.g15129 Utricularia gibba HOM05D002378 ORTHO05D002936 8.0e-15 84.0 103 50.5
vmacro18104 Vaccinium macrocarpon HOM05D002378 ORTHO05D002936 1.0e-14 83.6 103 54.4
GSVIVG01008226001 Vitis vinifera HOM05D002378 ORTHO05D002936 1.0e-14 83.6 103 53.4
EL10Ac2g04613 Beta vulgaris HOM05D002378 ORTHO05D002936 1.4e-14 83.2 106 49.1
CANSAT80G1104 Cannabis sativa HOM05D002378 ORTHO05D002936 2.3e-14 82.4 103 54.4
CAN.G497.6 Capsicum annuum HOM05D002378 ORTHO05D002936 2.3e-14 82.4 56 76.8
Hma1.2p1_0340F.1_g129970 Hydrangea macrophylla HOM05D002378 ORTHO05D002936 2.3e-14 82.4 108 53.7
RcHm_v2.0_Chr7g0184441 Rosa chinensis HOM05D002378 ORTHO05D002936 2.3e-14 82.4 105 54.3
HanXRQChr05g0157741 Helianthus annuus HOM05D002378 ORTHO05D002936 3.0e-14 82.0 102 52.9
Lsat_1_v5_gn_5_24260 Lactuca sativa HOM05D002378 ORTHO05D002936 3.0e-14 82.0 99 54.5
Lj5A141T92 Lonicera japonica HOM05D002378 ORTHO05D002936 3.0e-14 82.0 96 58.3
Nn3g17690 Nelumbo nucifera HOM05D002378 ORTHO05D002936 3.0e-14 82.0 111 51.4
PSO017G6834 Papaver somniferum HOM05D002378 ORTHO05D002936 3.9e-14 81.6 108 52.8
TWI15G1079 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 5.2e-14 81.3 105 59.0
Actinidia35073 Actinidia chinensis HOM05D002378 ORTHO05D002936 6.7e-14 80.9 105 57.1
CSS0029737 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 6.7e-14 80.9 109 52.3
Eucgr.B00690 Eucalyptus grandis HOM05D002378 ORTHO05D002936 6.7e-14 80.9 103 51.5
THA.LOC104805553 Tarenaya hassleriana HOM05D002378 ORTHO05D002936 6.7e-14 80.9 76 60.5
MELO3C017280.2 Cucumis melo HOM05D002378 ORTHO05D002936 8.8e-14 80.5 104 52.9
Glyma.18G280600 Glycine max HOM05D002378 ORTHO05D002936 8.8e-14 80.5 100 51.0
CsaV3_1G003550 Cucumis sativus L. HOM05D002378 ORTHO05D002936 1.1e-13 80.1 104 51.9
TAR371G0705 Trochodendron aralioides HOM05D002378 ORTHO05D023460 1.5e-13 79.7 106 53.8
Lj9A432T68 Lonicera japonica HOM05D002378 ORTHO05D002936 2.6e-13 79.0 99 54.5
Glyma.13G047500 Glycine max HOM05D002378 ORTHO05D002936 3.3e-13 78.6 96 56.2
Ciclev10011249m.g Citrus clementina HOM05D002378 ORTHO05D002936 4.4e-13 78.2 77 63.6
Haze_18594 Corylus avellana HOM05D002378 ORTHO05D002936 4.4e-13 78.2 96 54.2
CANSAT64G0412 Cannabis sativa HOM05D002378 ORTHO05D002936 7.4e-13 77.4 60 66.7
ClCG06G015080 Citrullus lanatus HOM05D002378 ORTHO05D002936 7.4e-13 77.4 101 51.5
Rhsim12G0144900 Rhododendron simsii HOM05D002378 ORTHO05D002936 7.4e-13 77.4 105 53.3
MD17G1073400 Malus domestica HOM05D002378 ORTHO05D002936 9.7e-13 77.0 88 60.2
Sabra04G0077700 Salix brachista HOM05D002378 ORTHO05D002936 9.7e-13 77.0 75 65.3
Thecc.04G139000 Theobroma cacao HOM05D002378 ORTHO05D002936 9.7e-13 77.0 78 60.3
arahy.Tifrunner.gnm1.ann1.AT7X8X Arachis hypogaea HOM05D002378 ORTHO05D002936 1.3e-12 76.6 103 52.4
ClCG06G015090 Citrullus lanatus HOM05D002378 ORTHO05D002936 1.3e-12 76.6 101 51.5
MELO3C017281.2 Cucumis melo HOM05D002378 ORTHO05D002936 1.3e-12 76.6 101 52.5
CsaV3_1G003560 Cucumis sativus L. HOM05D002378 ORTHO05D002936 1.3e-12 76.6 101 52.5
ECA246G5105 Erigeron canadensis HOM05D002378 ORTHO05D002936 1.3e-12 76.6 99 55.6
Eucgr.I02131 Eucalyptus grandis HOM05D002378 ORTHO05D002936 1.3e-12 76.6 83 59.0
Potri.004G103700 Populus trichocarpa HOM05D002378 ORTHO05D002936 1.3e-12 76.6 75 65.3
PGR083G2054 Punica granatum HOM05D002378 ORTHO05D002936 1.3e-12 76.6 105 48.6
Cfa019834 Carpinus fangiana HOM05D002378 ORTHO05D002936 1.7e-12 76.3 96 53.1
VMungo0464G0222 Vigna mungo HOM05D002378 ORTHO05D023460 1.7e-12 76.3 83 60.2
Glyma.19G044300 Glycine max HOM05D002378 ORTHO05D002936 2.2e-12 75.9 88 54.5
Aqoxy3G00380 Aquilegia oxysepala HOM05D002378 ORTHO05D002936 3.7e-12 75.1 113 46.9
MD09G1083100 Malus domestica HOM05D002378 ORTHO05D002936 3.7e-12 75.1 65 66.2
Manes.05G118200 Manihot esculenta HOM05D002378 ORTHO05D002936 3.7e-12 75.1 104 50.0
Prupe.5G216300 Prunus persica HOM05D002378 ORTHO05D002936 6.3e-12 74.3 102 50.0
TPR.G25085 Trifolium pratense HOM05D002378 ORTHO05D002936 6.3e-12 74.3 77 62.3
TWI81G0305 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 6.3e-12 74.3 105 50.5
HPP92_014008 Vanilla planifolia HOM05D002378 ORTHO05D002936 6.3e-12 74.3 118 47.5
HPP92_026838 Vanilla planifolia HOM05D002378 ORTHO05D002936 6.3e-12 74.3 118 47.5
arahy.Tifrunner.gnm1.ann1.X6Y4TE Arachis hypogaea HOM05D002378 ORTHO05D002936 8.2e-12 73.9 103 51.5
arahy.Tifrunner.gnm1.ann1.Q4MAQ8 Arachis hypogaea HOM05D002378 ORTHO05D002936 1.1e-11 73.6 103 48.5
CiPaw.15G125400 Carya illinoinensis HOM05D002378 ORTHO05D002936 1.1e-11 73.6 101 49.5
Carub.0007s3722 Capsella rubella HOM05D002378 ORTHO05D002936 1.4e-11 73.2 72 58.3
Thhalv10027687m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 1.4e-11 73.2 67 61.2
TWI77G0650 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 1.4e-11 73.2 99 52.5
COL.COLO4_16199 Corchorus olitorius HOM05D002378 ORTHO05D002936 1.8e-11 72.8 77 57.1
arahy.Tifrunner.gnm1.ann1.GUVP28 Arachis hypogaea HOM05D002378 ORTHO05D002936 2.4e-11 72.4 104 48.1
Ca_26147_v3 Cicer arietinum L. HOM05D002378 ORTHO05D002936 2.4e-11 72.4 99 47.5
Sp7g03280 Schrenkiella parvula HOM05D002378 ORTHO05D002936 2.4e-11 72.4 66 63.6
Psat1g060960 Pisum sativum HOM05D002378 ORTHO05D021942 4.1e-11 71.6 94 48.9
Potri.012G059300 Populus trichocarpa HOM05D002378 ORTHO05D002936 4.1e-11 71.6 109 47.7
Atru.chr9.739 Acer truncatum HOM05D002378 ORTHO05D002936 5.3e-11 71.2 104 51.9
BcaB06g27235 Brassica carinata HOM05D002378 ORTHO05D002936 5.3e-11 71.2 67 64.2
BcaC02g09661 Brassica carinata HOM05D002378 ORTHO05D002936 5.3e-11 71.2 67 64.2
C04p45270 Brassica napus HOM05D002378 ORTHO05D002936 5.3e-11 71.2 67 64.2
BolC4t26110H Brassica oleracea HOM05D002378 ORTHO05D002936 5.3e-11 71.2 67 64.2
TWI74G0601 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 7.0e-11 70.9 102 52.0
CARHR214080 Cardamine hirsuta HOM05D002378 ORTHO05D002936 2.0e-10 69.3 107 44.9
Gohir.D08G047300 Gossypium hirsutum HOM05D002378 ORTHO05D002936 2.0e-10 69.3 77 55.8
Lalb_Chr21g0317951 Lupinus albus HOM05D002378 ORTHO05D002936 2.0e-10 69.3 98 49.0
CiPaw.16G083400 Carya illinoinensis HOM05D002378 ORTHO05D002936 2.6e-10 68.9 101 47.5
Cc04_g07600 Coffea canephora HOM05D002378 ORTHO05D002936 2.6e-10 68.9 111 46.8
Gorai.006G063500 Gossypium raimondii HOM05D002378 ORTHO05D002936 3.5e-10 68.6 108 46.3
Duzib084G0818 Durio zibethinus HOM05D002378 ORTHO05D002936 4.5e-10 68.2 104 49.0
Gohir.D09G046600 Gossypium hirsutum HOM05D002378 ORTHO05D002936 4.5e-10 68.2 108 46.3
Cpa.g.sc13.58 Carica papaya HOM05D002378 ORTHO05D002936 5.9e-10 67.8 105 50.5
CDE02G2012 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 7.7e-10 67.4 72 58.3
Gohir.A09G044900 Gossypium hirsutum HOM05D002378 ORTHO05D002936 7.7e-10 67.4 108 46.3
Sabra17G0092800 Salix brachista HOM05D002378 ORTHO05D002936 7.7e-10 67.4 97 47.4
Sed0001506 Sechium edule HOM05D002378 ORTHO05D002936 7.7e-10 67.4 100 50.0
Gorai.004G046500 Gossypium raimondii HOM05D002378 ORTHO05D002936 1.0e-09 67.0 77 54.5
Medtr7g018590 Medicago truncatula HOM05D002378 ORTHO05D002936 1.0e-09 67.0 100 46.0
Medtr6g017100 Medicago truncatula HOM05D002378 ORTHO05D002936 1.3e-09 66.6 71 60.6
Duzib068G0447 Durio zibethinus HOM05D002378 ORTHO05D002936 1.7e-09 66.2 104 48.1
Sabra12G0040600 Salix brachista HOM05D002378 ORTHO05D002936 2.2e-09 65.9 104 46.2
QL10p023133 Quercus lobata HOM05D002378 ORTHO05D002936 2.9e-09 65.5 96 49.0
SHI30163 Sapria himalayana HOM05D002378 ORTHO05D002936 3.8e-09 65.1 71 62.0
BcaB02g07999 Brassica carinata HOM05D002378 ORTHO05D002936 5.0e-09 64.7 65 60.0
CDE01G0476 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 5.0e-09 64.7 72 55.6
ECA232G4813 Erigeron canadensis HOM05D002378 ORTHO05D002936 6.5e-09 64.3 109 44.0
Lj2g0001107 Lotus japonicus HOM05D002378 ORTHO05D002936 8.5e-09 63.9 100 47.0
Phvul.004G072200 Phaseolus vulgaris HOM05D002378 ORTHO05D002936 8.5e-09 63.9 83 54.2
Psat1g025720 Pisum sativum HOM05D002378 ORTHO05D002936 1.1e-08 63.5 96 45.8
Potri.017G111800 Populus trichocarpa HOM05D002378 ORTHO05D002936 1.1e-08 63.5 75 54.7
Thecc.03G027400 Theobroma cacao HOM05D002378 ORTHO05D002936 1.5e-08 63.2 104 46.2
BolC6t37044H Brassica oleracea HOM05D002378 ORTHO05D002936 4.2e-08 61.6 85 52.9
ATR0053G021 Amborella trichopoda HOM05D002378 ORTHO05D002936 5.5e-08 61.2 93 49.5
SEGI_31897 Sequoiadendron giganteum HOM05D002378 ORTHO05D023460 5.5e-08 61.2 96 41.7
DCAR_021426 Daucus carota HOM05D002378 ORTHO05D002936 9.4e-08 60.5 72 58.3
Ca_26252_v3 Cicer arietinum L. HOM05D002378 ORTHO05D002936 1.2e-07 60.1 84 52.4
Medtr2g055750 Medicago truncatula HOM05D002378 ORTHO05D002936 1.6e-07 59.7 96 43.8
Sc11g0008140 Simmondsia chinensis HOM05D002378 ORTHO05D002936 2.1e-07 59.3 98 46.9
Psat3g191320 Pisum sativum HOM05D002378 ORTHO05D002936 2.7e-07 58.9 58 60.3
BcaB04g17375 Brassica carinata HOM05D002378 ORTHO05D002936 3.6e-07 58.5 109 46.8
TPR.G4565 Trifolium pratense HOM05D002378 ORTHO05D002936 3.6e-07 58.5 69 52.2
COL.COLO4_22702 Corchorus olitorius HOM05D002378 ORTHO05D002936 4.7e-07 58.2 104 44.2
AL7G51900 Arabidopsis lyrata HOM05D002378 ORTHO05D002936 8.0e-07 57.4 107 41.1
BcaC07g37090 Brassica carinata HOM05D002378 ORTHO05D002936 1.0e-06 57.0 107 47.7
A08p04270 Brassica napus HOM05D002378 ORTHO05D002936 1.0e-06 57.0 107 47.7
C08p04540 Brassica napus HOM05D002378 ORTHO05D002936 1.0e-06 57.0 107 47.7
BolC8t47258H Brassica oleracea HOM05D002378 ORTHO05D002936 1.0e-06 57.0 107 47.7
BraA08t32454Z Brassica rapa HOM05D002378 ORTHO05D002936 1.0e-06 57.0 107 47.7
Dinv06179 Davidia involucrata HOM05D002378 ORTHO05D025263 1.0e-06 57.0 100 42.0
PGSC0003DMG400023069 Solanum tuberosum HOM05D002378 ORTHO05D002936 1.0e-06 57.0 97 44.3
AT5G38640 Arabidopsis thaliana HOM05D002378 ORTHO05D002936 1.4e-06 56.6 108 41.7
CARHR038980 Cardamine hirsuta HOM05D002378 ORTHO05D002936 2.3e-06 55.8 110 40.0
AL1G55800 Arabidopsis lyrata HOM05D002378 ORTHO05D002936 3.0e-06 55.5 113 41.6
Sopen12g018460 Solanum pennellii HOM05D002378 ORTHO05D002936 3.0e-06 55.5 98 43.9
Ca_25197_v3 Cicer arietinum L. HOM05D002378 ORTHO05D002936 4.0e-06 55.1 96 39.6
Lalb_Chr08g0235111 Lupinus albus HOM05D002378 ORTHO05D002936 5.2e-06 54.7 97 42.3
HanXRQChr09g0258901 Helianthus annuus HOM05D002378 ORTHO05D002936 6.7e-06 54.3 95 40.0
Thhalv10011298m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 8.8e-06 53.9 109 42.2


User provided reference genes

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