Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 9.9e-211 736.5 362 100.0
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 7.0e-156 554.3 366 77.3
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.5e-153 545.8 366 76.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-147 526.6 364 72.5
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.0e-146 523.9 376 71.0
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.5e-146 521.2 387 69.0
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-145 520.4 387 68.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-145 518.8 387 68.7
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 3.0e-143 512.3 374 68.2
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.0e-143 512.3 374 68.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.8e-141 505.8 365 68.5
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.9e-138 495.7 370 67.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.5e-137 493.4 365 68.5
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.5e-137 493.4 397 63.2
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.5e-137 493.4 370 68.9
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 9.5e-137 490.7 364 68.1
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.6e-136 488.8 363 66.9
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.6e-136 488.8 380 64.7
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.6e-136 488.8 364 67.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.0e-135 487.3 364 67.3
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.4e-135 486.9 366 67.5
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.5e-134 483.4 366 66.1
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.4e-134 481.9 364 65.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.7e-134 481.5 364 65.7
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 9.8e-134 480.7 366 66.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.8e-133 479.2 362 66.3
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 5.4e-132 474.9 368 64.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 5.4e-132 474.9 366 64.2
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 7.0e-132 474.6 392 62.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-131 473.0 367 65.4
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.7e-131 472.6 364 64.3
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-131 471.9 364 64.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.9e-130 469.2 363 64.5
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.6e-130 468.0 363 64.7
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 8.6e-130 467.6 366 64.2
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.5e-129 466.1 363 64.5
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.3e-129 465.7 359 66.3
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.3e-129 465.7 363 63.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 5.6e-129 464.9 399 61.4
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 9.5e-129 464.2 360 65.6
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.4e-127 460.3 374 62.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.8e-127 459.9 361 63.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.3e-127 459.5 366 62.6
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 4.0e-127 458.8 366 63.1
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 1.2e-126 457.2 372 63.7
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 5.7e-126 454.9 423 57.4
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 7.5e-126 454.5 365 63.0
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.7e-125 453.4 367 62.4
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.4e-125 451.4 365 62.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.4e-124 450.3 363 62.3
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.4e-124 449.5 363 62.5
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.2e-124 449.1 372 62.6
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 9.2e-124 447.6 366 63.4
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.2e-123 447.2 364 62.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.6e-123 446.8 362 63.0
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 3.5e-123 445.7 361 63.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 3.5e-123 445.7 366 62.0
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.9e-123 444.9 363 62.3
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.0e-122 444.1 366 60.7
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.7e-122 443.4 363 60.6
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-122 443.4 284 77.5
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 3.0e-122 442.6 362 62.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 3.0e-122 442.6 298 74.8
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 5.0e-122 441.8 364 62.4
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 6.6e-122 441.4 365 61.6
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.6e-122 441.0 366 60.4
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 8.6e-122 441.0 363 61.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 8.6e-122 441.0 365 61.6
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-121 440.7 365 61.4
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.1e-121 440.7 363 60.9
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.5e-121 440.3 362 61.9
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.9e-121 439.9 362 62.4
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 5.6e-121 438.3 296 70.9
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 2.1e-120 436.4 368 60.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.6e-120 435.6 352 62.8
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.6e-120 435.6 352 62.8
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 3.6e-120 435.6 361 62.3
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.7e-120 435.3 329 66.3
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 6.2e-120 434.9 359 62.1
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.0e-119 434.1 361 61.8
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.4e-119 433.7 362 60.8
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.8e-119 433.3 361 61.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.3e-119 433.0 323 67.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 4.0e-119 432.2 364 61.3
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.8e-119 431.4 387 61.5
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.5e-118 430.3 367 61.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 2.6e-118 429.5 356 61.0
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 9.8e-118 427.6 366 60.4
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.3e-117 427.2 349 61.9
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.3e-117 427.2 357 61.3
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.7e-117 426.8 361 57.6
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.7e-117 426.8 359 61.0
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.9e-117 426.0 323 65.9
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 6.4e-117 424.9 374 59.4
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 7.0e-116 421.4 368 59.5
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-115 420.2 352 60.5
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 6.0e-115 418.3 349 61.3
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.0e-114 417.5 354 59.3
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 3.0e-114 416.0 360 58.6
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 6.6e-114 414.8 297 69.0
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.5e-113 412.9 366 59.6
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 5.6e-113 411.8 364 60.4
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 5.6e-113 411.8 364 60.4
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.2e-110 404.1 366 57.4
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.7e-109 400.2 330 61.5
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 2.2e-109 399.8 356 56.7
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.2e-101 373.2 359 55.2
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 4.9e-101 372.1 376 52.9
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.4e-94 349.4 293 61.8
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 4.4e-94 349.0 293 60.4
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.8e-87 327.0 366 51.1
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.6e-86 323.2 361 47.9
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.5e-86 322.4 285 56.1
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.7e-83 313.2 363 48.2
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.3e-82 310.8 373 46.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.7e-82 308.5 366 48.9
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.7e-82 308.5 269 60.2
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.9e-81 307.0 348 46.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.6e-80 303.9 321 49.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 4.0e-79 299.3 337 44.8
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.6e-78 296.6 360 45.8
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 6.4e-77 292.0 341 44.6
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.6e-72 277.3 368 45.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 5.3e-47 192.6 339 33.9
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.1e-43 179.1 161 56.5
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.1e-39 168.3 125 70.4
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.5e-36 157.1 200 43.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 9.4e-36 155.2 138 56.5
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.7e-35 153.7 365 29.6
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 9.7e-33 145.2 116 62.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 3.8e-29 133.3 100 66.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.2e-28 129.0 87 72.4
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-27 127.9 142 46.5
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.6e-27 126.7 83 74.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-25 120.6 121 53.7
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.8e-24 117.1 81 65.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 79 69.6
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 4.5e-22 109.8 104 59.6
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-22 109.8 74 71.6
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.9e-22 109.4 74 71.6
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-21 108.6 79 68.4
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-21 107.8 74 70.3
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-21 107.8 74 70.3
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.9e-21 107.1 354 28.0
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.6e-21 105.5 74 67.6
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.5e-20 102.1 79 64.6
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.1e-19 100.9 89 58.4
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.7e-19 99.8 70 67.1
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.1e-19 99.4 79 62.0
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-18 97.4 101 54.5
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.2e-17 95.1 143 38.5
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-17 94.7 110 47.3
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 9.8e-17 92.0 76 60.5
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 9.8e-17 92.0 62 71.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.3e-16 91.7 110 46.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.3e-16 89.4 236 29.2
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-15 87.4 51 82.4
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.2e-14 85.1 76 57.9
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 2.0e-14 84.3 68 69.1
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.0e-13 82.0 45 82.2
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.1e-11 74.3 52 67.3
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.4e-09 66.6 42 78.6
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-08 64.7 42 73.8
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-08 64.7 45 71.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.9e-08 63.9 42 71.4
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-07 61.6 42 66.7
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 1.2e-06 58.5 61 57.4
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 1.2e-06 58.5 61 57.4
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 2.7e-06 57.4 42 64.3


User provided reference genes

Program Settings