Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 5.4e-119 431.0 219 100.0
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.0e-118 429.1 219 99.5
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 5.8e-105 384.4 220 85.9
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 2.3e-101 372.5 220 82.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 9.5e-100 367.1 220 80.9
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.2e-99 366.7 220 81.4
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.1e-99 365.9 220 81.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.1e-99 365.9 220 80.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 80.0
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.3e-98 362.5 220 79.5
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 5.8e-97 357.8 220 79.5
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.6e-97 357.5 220 81.4
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.1e-95 353.6 220 77.7
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.4e-95 353.2 220 80.0
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 7.1e-95 350.9 229 76.9
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 7.1e-95 350.9 220 76.4
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 9.2e-95 350.5 220 76.8
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.0e-94 347.8 220 76.4
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 76.4
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 76.4
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 75.0
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 77.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 76.9
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 8.6e-93 344.0 221 77.4
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.5e-92 342.4 221 75.6
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.5e-92 342.4 221 76.9
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 3.3e-92 342.0 221 76.5
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 7.3e-92 340.9 221 76.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 9.6e-92 340.5 221 76.9
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 9.6e-92 340.5 220 76.4
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.6e-91 339.7 220 75.9
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.6e-91 339.7 221 76.9
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 2.8e-91 339.0 221 76.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.8e-91 339.0 220 75.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 3.6e-91 338.6 219 74.4
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 4.7e-91 338.2 221 76.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.2e-91 337.8 222 76.1
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 8.1e-91 337.4 221 76.0
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.1e-91 337.4 222 75.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 8.1e-91 337.4 219 74.4
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.1e-90 337.0 221 75.1
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.1e-90 337.0 220 75.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.4e-90 336.7 222 75.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.1e-90 335.5 221 75.6
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-90 335.5 222 75.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.2e-89 333.6 221 76.0
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-89 332.0 223 75.3
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.4e-89 331.6 220 75.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 7.6e-89 330.9 220 73.6
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 7.6e-89 330.9 221 74.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 9.9e-89 330.5 220 71.8
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.2e-88 329.3 221 73.3
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.9e-88 328.9 221 74.7
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.9e-88 328.9 220 72.7
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.4e-87 325.9 233 69.5
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 4.2e-87 325.1 220 73.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 2.3e-85 319.3 222 71.2
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 2.3e-85 319.3 222 71.2
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.0e-85 318.9 239 69.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.9e-85 318.5 222 71.2
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 6.6e-85 317.8 221 71.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 8.7e-85 317.4 220 70.9
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.5e-84 315.8 221 71.0
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 3.3e-84 315.5 221 71.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 4.3e-84 315.1 198 76.8
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.3e-84 314.3 220 72.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 9.6e-84 313.9 221 70.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 9.6e-84 313.9 220 70.9
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.8e-83 312.4 221 71.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 4.8e-83 311.6 221 70.1
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 4.0e-82 308.5 221 69.7
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.3e-82 308.1 220 70.0
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.2e-81 307.0 300 56.0
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.6e-81 304.3 204 72.5
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.7e-80 303.1 219 68.0
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.4e-79 300.1 219 67.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.4e-79 300.1 221 67.4
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.6e-78 296.6 320 51.9
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-78 296.2 222 67.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 7.9e-78 294.3 194 71.6
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-77 293.5 222 66.7
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.3e-77 293.5 194 73.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.3e-77 292.7 197 73.6
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.9e-77 292.0 193 74.6
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.9e-77 292.0 221 67.0
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.9e-77 292.0 221 67.0
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 6.6e-77 291.2 200 73.0
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.5e-76 289.3 213 67.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 3.3e-76 288.9 222 65.3
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.4e-76 287.7 194 73.2
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.6e-75 286.6 194 72.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.1e-75 286.2 289 54.7
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.8e-75 285.8 223 65.5
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.8e-75 285.8 223 65.5
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.6e-75 285.4 193 71.5
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.4e-74 282.7 211 66.8
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.4e-74 282.7 221 65.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 3.1e-74 282.3 221 64.7
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 3.1e-74 282.3 221 64.7
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 4.0e-74 282.0 223 64.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-73 280.4 221 64.7
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 4.5e-73 278.5 221 64.7
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.5e-73 278.5 222 66.2
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 5.8e-73 278.1 196 70.9
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 7.6e-73 277.7 224 62.5
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.6e-73 277.7 196 70.4
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 9.9e-73 277.3 194 70.1
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 9.9e-73 277.3 183 72.1
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.9e-73 277.3 214 63.1
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.3e-72 276.9 199 69.8
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.9e-72 275.8 214 63.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-71 273.9 194 69.6
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 6.0e-70 268.1 180 75.0
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-69 266.9 194 69.1
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 2.5e-68 262.7 170 74.7
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.5e-68 262.7 220 58.2
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 9.6e-68 260.8 172 72.7
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.7e-67 258.8 210 62.9
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.0e-65 253.1 219 58.4
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.9e-64 249.2 227 59.5
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.9e-64 249.2 227 59.5
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 9.3e-63 244.2 222 59.5
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.7e-61 238.0 170 68.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.6e-59 233.4 221 53.8
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 6.3e-59 231.5 196 62.2
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 8.2e-59 231.1 164 72.0
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 8.2e-59 231.1 219 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.1e-58 229.2 195 58.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.2e-57 227.3 220 50.5
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.7e-56 223.4 147 77.6
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.0e-56 221.9 192 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 8.5e-56 221.1 222 50.0
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.8e-48 195.7 162 59.9
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.1e-44 184.1 182 56.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.1e-42 175.6 219 43.8
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.9e-39 166.8 175 52.0
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.7e-38 162.9 248 44.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 9.7e-36 154.5 93 75.3
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.1e-34 151.0 228 37.3
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 7.7e-33 144.8 224 37.1
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 5.0e-32 142.1 218 38.1
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-31 139.8 100 72.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.3e-28 129.4 141 46.8
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.5e-25 119.4 84 70.2
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 6.1e-22 108.6 84 59.5
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-16 90.5 94 50.0
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 7.2e-15 85.1 85 58.8
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.4e-10 70.9 142 35.2
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.6e-09 67.4 206 25.2
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 1.7e-08 63.9 43 67.4


User provided reference genes

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