Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 0.0e+00 2413.6 1246 100.0
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 0.0e+00 1177.2 1293 53.8
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 0.0e+00 1100.9 1344 48.7
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 3.0e-259 899.4 1237 44.9
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 2.3e-251 873.2 1226 43.4
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 4.5e-247 859.0 1355 42.0
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 4.3e-245 852.4 1340 42.1
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.0e-242 843.6 1327 39.9
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.0e-238 831.2 1332 42.6
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 3.9e-238 829.3 1346 40.0
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.4e-235 820.8 1332 41.1
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 8.9e-235 818.1 1354 39.1
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.6e-234 816.6 1324 38.4
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 9.2e-232 808.1 1347 38.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 3.0e-230 803.1 1302 39.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.5e-229 800.8 1317 39.4
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.9e-229 800.4 1328 39.5
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.5e-229 800.0 1225 41.9
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 4.7e-228 795.8 1344 39.1
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 3.4e-226 789.6 1341 37.8
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.3e-225 787.7 1343 37.5
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.4e-224 784.3 1360 38.5
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 4.1e-224 782.7 1333 38.7
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 9.2e-224 781.6 1344 38.8
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 1.6e-223 780.8 1319 37.8
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.1e-223 780.4 1353 38.6
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 2.1e-223 780.4 1339 39.4
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 3.5e-223 779.6 1321 39.8
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 6.0e-223 778.9 1346 39.7
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 7.8e-223 778.5 1352 39.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.3e-222 777.7 1306 39.1
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 3.9e-222 776.2 1313 39.2
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 5.1e-222 775.8 1322 38.4
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.6e-222 775.4 1351 39.7
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 1.5e-221 774.2 1317 39.3
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 1.9e-221 773.9 1338 39.7
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 4.3e-221 772.7 1338 38.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.4e-219 767.7 1351 39.5
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 1.8e-219 767.3 1257 39.7
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.1e-219 766.5 1352 39.5
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 8.9e-219 765.0 1353 39.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 1.2e-218 764.6 1456 37.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 1.5e-218 764.2 1334 38.5
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 1.3e-217 761.1 1343 38.9
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.3e-217 761.1 1270 40.2
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 6.4e-217 758.8 1324 38.4
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.1e-216 758.1 1344 38.6
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 4.2e-216 756.1 1346 38.1
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.7e-215 753.4 1350 39.2
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.3e-212 744.6 1288 40.3
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.5e-210 737.6 1095 41.8
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 6.0e-207 725.7 1342 36.7
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.0e-203 713.0 1362 36.9
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 5.3e-203 712.6 1299 37.4
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 6.9e-203 712.2 1311 37.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.3e-198 698.0 1323 37.0
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.1e-196 690.6 1295 37.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 2.8e-196 690.3 1208 38.2
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 6.2e-196 689.1 1293 37.2
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 4.0e-195 686.4 1268 37.3
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 3.8e-193 679.9 1305 37.1
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.6e-191 674.5 1347 36.1
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 6.0e-191 672.5 1311 36.5
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.8e-190 671.0 1301 36.2
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 5.1e-190 669.5 1333 36.2
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 6.7e-190 669.1 1304 36.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.3e-188 664.8 1291 36.5
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 3.7e-188 663.3 1281 37.2
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.3e-187 659.4 1293 35.9
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.0e-185 655.2 1133 38.5
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.6e-183 646.4 1276 35.7
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.5e-181 641.3 1272 36.2
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.4e-179 634.8 1308 35.4
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 4.5e-178 629.8 1233 35.9
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.1e-175 620.9 1248 35.5
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.1e-171 607.1 1305 34.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 3.4e-170 603.6 1268 34.8
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.3e-165 587.0 1296 34.0
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.0e-163 579.3 1140 36.3
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 4.5e-162 576.6 1134 35.4
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 8.5e-161 572.4 1328 33.7
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.5e-160 571.6 1107 35.6
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.5e-160 570.9 1073 35.6
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.2e-160 570.5 1326 33.7
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 4.8e-156 556.6 1035 36.6
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 7.7e-154 549.3 1255 34.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 7.2e-152 542.7 1239 32.8
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.7e-151 540.8 1229 32.9
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.8e-150 538.1 1066 35.6
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 9.5e-136 489.2 1196 32.8
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.3e-132 478.8 1328 32.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 4.9e-124 450.3 702 43.3
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 5.4e-123 446.8 694 42.2
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 6.0e-122 443.4 658 42.6
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.7e-116 425.2 652 39.6
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.3e-110 404.8 641 41.5
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.6e-106 392.1 685 38.4
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 5.6e-96 357.1 709 37.0
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.2e-92 345.1 580 38.6
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 6.4e-92 343.6 813 31.6
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.1e-91 342.8 758 33.9
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.4e-91 342.4 622 36.3
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.4e-91 342.4 772 34.2
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.5e-85 322.4 707 34.9
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 3.7e-79 301.2 338 48.2
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.1e-74 285.4 884 27.1
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.3e-70 270.8 1040 26.3
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.5e-69 269.2 608 35.5
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.3e-54 217.6 328 38.7
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.8e-52 211.5 385 35.1
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.1e-46 193.4 955 23.7
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 1.0e-44 186.8 291 37.1
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.8e-39 167.9 279 39.4
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.5e-35 156.4 155 55.5
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 3.2e-35 155.2 276 38.8
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.4e-25 123.2 486 29.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.5e-24 119.8 526 27.2
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.7e-15 89.7 563 26.3
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 8.3e-15 87.4 386 23.8
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.8e-14 86.3 563 26.1
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.4e-14 85.9 503 25.4
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.2e-14 85.5 474 24.9
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 9.2e-14 84.0 493 26.6
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 9.2e-14 84.0 390 23.8
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.0e-13 82.8 82 54.9
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 7.8e-13 80.9 471 26.8
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 7.8e-13 80.9 471 26.8
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.0e-12 80.5 139 33.8
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.8e-10 72.4 438 24.9
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.7e-07 63.2 269 22.7
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 2.2e-07 62.8 238 22.7
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 4.9e-07 61.6 480 23.1
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.4e-06 60.1 129 31.0
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 3.2e-06 58.9 74 44.6
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 9.2e-06 57.4 475 23.4


User provided reference genes

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