Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold203G41561 Striga asiatica HOM05D022778 ORTHO05D000233 1.5e-71 272.7 134 100.0
SGA_v2.0_scaffold61G21245 Striga asiatica HOM05D000036 ORTHO05D010104 1.4e-64 249.6 134 93.3
SGA_v2.0_scaffold624G53235 Striga asiatica HOM05D022778 ORTHO05D000233 1.0e-48 196.8 107 89.7
SGA_v2.0_scaffold177G39442 Striga asiatica HOM05D007793 ORTHO05D000233 1.0e-40 170.2 86 91.9
TPR.G11501 Trifolium pratense HOM05D007793 ORTHO05D010104 1.1e-18 97.1 126 43.7
Phvul.001G089000 Phaseolus vulgaris HOM05D007793 ORTHO05D010104 5.6e-18 94.7 124 45.2
SGA_v2.0_scaffold18G08286 Striga asiatica HOM05D022778 ORTHO05D010104 1.6e-17 93.2 139 39.6
Medtr2g092960 Medicago truncatula HOM05D007793 ORTHO05D010104 3.6e-17 92.0 135 42.2
TPR.G11532 Trifolium pratense HOM05D007793 ORTHO05D010104 1.1e-16 90.5 113 45.1
Medtr2g037270 Medicago truncatula HOM05D007793 ORTHO05D010104 1.8e-16 89.7 126 38.9
Medtr3g011560 Medicago truncatula HOM05D007793 ORTHO05D010104 1.8e-16 89.7 126 38.9
Medtr8g017000 Medicago truncatula HOM05D007793 ORTHO05D010104 1.8e-16 89.7 126 38.9
VMungo0647G0191 Vigna mungo HOM05D007793 ORTHO05D010104 8.9e-16 87.4 128 43.0
Phvul.011G125600 Phaseolus vulgaris HOM05D007793 ORTHO05D010104 1.5e-15 86.7 75 57.3
VMungo1215G0329 Vigna mungo HOM05D007793 ORTHO05D010104 7.6e-15 84.3 128 41.4
TPR.G7307 Trifolium pratense HOM05D007793 ORTHO05D000233 1.3e-14 83.6 132 34.8
SGA_v2.0_scaffold277G46711 Striga asiatica HOM05D012899 ORTHO05D000233 2.2e-14 82.8 97 46.4
SGA_v2.0_scaffold214G42295 Striga asiatica HOM05D012899 ORTHO05D013633 8.4e-14 80.9 97 45.4
Psat5g276440 Pisum sativum HOM05D007793 ORTHO05D000636 1.0e-11 73.9 103 35.9
VMungo0464G1009 Vigna mungo HOM05D007793 ORTHO05D010104 1.0e-11 73.9 76 50.0
SGA_v2.0_scaffold294G47483 Striga asiatica HOM05D022778 ORTHO05D010104 1.7e-11 73.2 114 38.6
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 2.3e-11 72.8 119 39.5
CANSAT25G0318 Cannabis sativa HOM05D007314 ORTHO05D010380 3.0e-11 72.4 111 36.9
VMungo0251G1369 Vigna mungo HOM05D007793 ORTHO05D010104 3.9e-11 72.0 69 47.8
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 1.2e-09 67.0 92 38.0
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-09 66.6 92 40.2
FvH4_1g25001 Fragaria vesca HOM05D000539 ORTHO05D000233 2.8e-09 65.9 75 41.3
TPR.G30789 Trifolium pratense HOM05D007793 ORTHO05D000233 2.8e-09 65.9 120 36.7
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 3.6e-09 65.5 75 40.0
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.2e-09 64.7 130 30.8
FvH4_1g28483 Fragaria vesca HOM05D000539 ORTHO05D000233 8.1e-09 64.3 75 40.0
FvH4_2g21272 Fragaria vesca HOM05D000539 ORTHO05D000233 8.1e-09 64.3 75 40.0
FvH4_3g14251 Fragaria vesca HOM05D000539 ORTHO05D000233 8.1e-09 64.3 75 40.0
FvH4_4g15803 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-08 63.9 78 41.0
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-08 63.9 84 40.5
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-08 63.5 93 35.5
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-08 63.5 93 35.5
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-08 63.5 90 36.7
FvH4_6g12902 Fragaria vesca HOM05D000539 ORTHO05D000233 1.8e-08 63.2 75 38.7
Sed0028051 Sechium edule HOM05D007314 ORTHO05D010380 1.8e-08 63.2 124 33.9
FAN15G1280 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.4e-08 62.8 84 40.5
RcHm_v2.0_Chr2g0123111 Rosa chinensis HOM05D000539 ORTHO05D000233 2.4e-08 62.8 76 38.2
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 3.1e-08 62.4 112 34.8
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-08 62.4 81 40.7
VMungo1080G0074 Vigna mungo HOM05D007793 ORTHO05D000044 3.1e-08 62.4 136 29.4
Ciclev10017763m.g Citrus clementina HOM05D000616 ORTHO05D000233 4.0e-08 62.0 108 33.3
FvH4_6g32742 Fragaria vesca HOM05D000539 ORTHO05D000233 4.0e-08 62.0 91 36.3
FAN16G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.0e-08 62.0 84 39.3
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.0e-08 62.0 84 39.3
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.0e-08 62.0 84 39.3
FAN28G1622 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.0e-08 62.0 84 39.3
RcHm_v2.0_Chr2g0095191 Rosa chinensis HOM05D000107 ORTHO05D000062 5.2e-08 61.6 129 32.6
RcHm_v2.0_Chr2g0108861 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-08 61.6 66 45.5
Hund13368 Selenicereus undatus HOM05D009682 ORTHO05D000385 6.8e-08 61.2 123 30.9
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 8.9e-08 60.8 110 30.9
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 8.9e-08 60.8 77 37.7
FvH4_3g31713 Fragaria vesca HOM05D000539 ORTHO05D000233 8.9e-08 60.8 77 37.7
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 8.9e-08 60.8 126 34.1
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 8.9e-08 60.8 81 39.5
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 1.2e-07 60.5 77 37.7
FvH4_4g16571 Fragaria vesca HOM05D000539 ORTHO05D000233 1.5e-07 60.1 79 40.5
RcHm_v2.0_Chr1g0325021 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-07 60.1 128 35.2
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-07 60.1 77 39.0
CANSAT11G2450 Cannabis sativa HOM05D013932 ORTHO05D011884 2.0e-07 59.7 132 28.0
FAN09G2875 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.0e-07 59.7 84 39.3
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-07 59.7 95 38.9
ECA236G2459 Erigeron canadensis HOM05D009001 ORTHO05D011396 2.6e-07 59.3 87 29.9
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 2.6e-07 59.3 77 37.7
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.6e-07 59.3 84 38.1
FAN18G3492 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.6e-07 59.3 84 39.3
FAN25G0088 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.6e-07 59.3 84 38.1
MBI01_g06508_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 2.6e-07 59.3 69 34.8
MBI01_g41484_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 2.6e-07 59.3 69 34.8
MBI10_g08041_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D004199 2.6e-07 59.3 124 30.6
RhsimUnG0218400 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.6e-07 59.3 124 29.8
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 2.6e-07 59.3 128 35.2
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 2.6e-07 59.3 121 32.2
MBI08_g00251_MAGBIO Magnolia biondii HOM05D008572 ORTHO05D004199 3.4e-07 58.9 88 35.2
MBI15_g06453_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D004199 3.4e-07 58.9 88 36.4
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 3.4e-07 58.9 108 34.3
CANSAT54G1255 Cannabis sativa HOM05D000539 ORTHO05D000233 5.8e-07 58.2 133 31.6
FvH4_2g07752 Fragaria vesca HOM05D000539 ORTHO05D000233 5.8e-07 58.2 72 38.9
CANSAT54G2622 Cannabis sativa HOM05D000539 ORTHO05D000233 7.6e-07 57.8 133 27.8
ECA236G1401 Erigeron canadensis HOM05D000107 ORTHO05D000062 7.6e-07 57.8 92 32.6
CANSAT01G0116 Cannabis sativa HOM05D000539 ORTHO05D000233 9.9e-07 57.4 119 34.5
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 9.9e-07 57.4 112 28.6
RcHm_v2.0_Chr2g0102081 Rosa chinensis HOM05D000539 ORTHO05D000233 9.9e-07 57.4 81 39.5
Ciclev10023988m.g Citrus clementina HOM05D000616 ORTHO05D000233 1.7e-06 56.6 115 32.2
FvH4_4g10363 Fragaria vesca HOM05D008321 ORTHO05D003768 1.7e-06 56.6 109 31.2
RcHm_v2.0_Chr2g0147531 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-06 56.6 67 41.8
TPR.G29967 Trifolium pratense HOM05D007793 ORTHO05D000233 1.7e-06 56.6 106 34.9
FvH4_4g15323 Fragaria vesca HOM05D008321 ORTHO05D010380 2.2e-06 56.2 108 32.4
SGA_v2.0_scaffold46G17355 Striga asiatica HOM05D002782 ORTHO05D000233 2.2e-06 56.2 113 32.7
CANSAT54G2907 Cannabis sativa HOM05D000539 ORTHO05D000233 2.9e-06 55.8 133 28.6
ECA247G4030 Erigeron canadensis HOM05D009001 ORTHO05D011396 2.9e-06 55.8 111 29.7
FAN09G4072 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.9e-06 55.8 67 38.8
Zm00001eb093240 Zea mays HOM05D013194 ORTHO05D015061 2.9e-06 55.8 134 29.9
Zm00001eb133400 Zea mays HOM05D013194 ORTHO05D015061 2.9e-06 55.8 134 29.9
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 2.9e-06 55.8 134 29.9
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 6.4e-06 54.7 121 27.3
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 6.4e-06 54.7 121 27.3
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 6.4e-06 54.7 77 36.4
FAN03G0903 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.4e-06 54.3 108 36.1
Lsat_1_v5_gn_0_34120 Lactuca sativa HOM05D008452 ORTHO05D010294 8.4e-06 54.3 129 29.5
MBI16_g26158_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 8.4e-06 54.3 69 31.9
Os05g0359000 Oryza sativa ssp. japonica HOM05D013194 ORTHO05D015061 8.4e-06 54.3 75 30.7
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 8.4e-06 54.3 92 33.7


User provided reference genes

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