Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 3.1e-84 315.1 156 100.0
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.1e-46 190.3 132 77.3
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.5e-46 189.9 128 72.7
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.3e-46 188.3 127 72.4
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 9.6e-46 187.2 127 78.7
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 9.6e-46 187.2 127 71.7
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 2.8e-45 185.7 130 72.3
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 3.1e-44 182.2 128 73.4
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.1e-44 182.2 127 75.6
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 4.0e-44 181.8 127 74.8
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 9.0e-44 180.6 128 71.9
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 9.0e-44 180.6 130 72.3
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 2.6e-43 179.1 151 64.9
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 5.8e-43 177.9 126 72.2
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 5.8e-43 177.9 129 69.0
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 5.8e-43 177.9 129 69.0
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 5.8e-43 177.9 129 69.0
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.0e-42 177.2 126 70.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.3e-42 176.8 130 69.2
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.7e-42 176.4 127 68.5
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.9e-42 175.6 127 67.7
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 4.9e-42 174.9 147 61.9
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 8.4e-42 174.1 130 70.0
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 8.4e-42 174.1 119 74.8
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 8.4e-42 174.1 127 67.7
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.1e-41 173.7 126 69.0
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.1e-41 173.7 127 68.5
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.4e-41 173.3 167 59.3
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.9e-41 172.9 128 71.1
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.9e-41 172.9 134 65.7
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.5e-41 172.6 149 63.1
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 3.2e-41 172.2 130 69.2
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.2e-41 172.2 126 70.6
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 7.1e-41 171.0 130 69.2
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 9.3e-41 170.6 127 70.1
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-40 169.9 148 64.9
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.6e-40 169.9 127 71.7
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.6e-40 169.9 171 57.9
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 2.1e-40 169.5 129 66.7
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.5e-40 168.7 128 71.1
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.5e-40 168.7 139 65.5
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 6.0e-40 167.9 167 58.1
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 7.9e-40 167.5 132 68.2
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 7.9e-40 167.5 169 58.0
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.0e-39 167.2 169 58.0
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 1.3e-39 166.8 172 57.6
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.8e-39 166.4 127 68.5
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.3e-39 166.0 172 57.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.3e-39 166.0 130 69.2
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.0e-39 165.6 130 70.8
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 3.0e-39 165.6 130 69.2
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.0e-39 165.6 128 67.2
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 3.9e-39 165.2 172 57.0
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 3.9e-39 165.2 172 57.0
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 3.9e-39 165.2 172 57.0
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 5.1e-39 164.9 128 69.5
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.1e-39 164.9 128 69.5
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.9e-38 162.9 131 68.7
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.3e-38 162.2 118 68.6
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 4.3e-38 161.8 118 68.6
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 5.7e-38 161.4 118 67.8
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.6e-37 159.8 128 68.8
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.6e-37 159.8 127 68.5
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 4.8e-37 158.3 139 61.2
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 6.3e-37 157.9 129 62.8
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 8.2e-37 157.5 136 61.0
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.1e-36 155.2 135 63.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.3e-36 154.8 130 63.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.9e-36 154.5 100 75.0
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 6.9e-36 154.5 134 63.4
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 9.0e-36 154.1 151 57.6
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.2e-35 153.7 133 63.9
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.5e-35 153.3 136 64.7
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.6e-35 152.5 118 68.6
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.9e-35 151.4 131 63.4
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.7e-35 151.0 132 62.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 7.7e-35 151.0 167 55.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.0e-34 150.6 136 61.8
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.3e-34 150.2 77 88.3
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.9e-34 149.1 131 61.8
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 6.5e-34 147.9 111 67.6
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 6.5e-34 147.9 111 67.6
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 8.5e-34 147.5 103 73.8
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 8.5e-34 147.5 127 63.8
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 8.5e-34 147.5 130 60.0
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 8.5e-34 147.5 127 63.0
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.5e-33 146.0 116 64.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 3.2e-33 145.6 126 61.9
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 4.2e-33 145.2 129 58.9
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 4.2e-33 145.2 128 64.8
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 2.1e-32 142.9 77 84.4
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.6e-32 142.1 146 53.4
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 3.6e-32 142.1 117 61.5
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.6e-32 141.7 134 58.2
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 4.6e-32 141.7 127 61.4
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.1e-32 141.4 95 71.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 7.9e-32 141.0 95 70.5
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.0e-31 140.6 114 63.2
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.0e-31 140.6 94 72.3
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.4e-31 140.2 136 56.6
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 1.4e-31 140.2 136 56.6
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.4e-31 140.2 75 82.7
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.8e-31 139.8 78 80.8
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 2.3e-31 139.4 78 82.1
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.1e-30 137.1 77 79.2
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.5e-30 136.7 102 67.6
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.3e-29 133.7 141 53.2
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.1e-28 130.6 95 67.4
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 2.4e-28 129.4 103 60.2
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 4.1e-28 128.6 79 72.2
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 2.0e-27 126.3 77 77.9
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.0e-27 126.3 77 77.9
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.0e-27 126.3 77 77.9
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 4.5e-27 125.2 78 71.8
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.9e-26 122.5 90 63.3
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.4e-25 120.2 115 56.5
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.5e-25 119.4 67 83.6
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 7.2e-25 117.9 128 53.9
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.8e-20 103.2 68 70.6
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.1e-20 102.1 77 67.5
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.2e-19 100.5 128 49.2
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 4.2e-17 92.0 75 56.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.0e-15 87.4 75 58.7
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 8.8e-15 84.3 48 77.1
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.1e-14 84.0 47 80.9
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 3.3e-14 82.4 42 83.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 7.0e-12 74.7 42 78.6
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 6.5e-10 68.2 39 82.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.1e-08 61.6 67 44.8
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.8e-07 60.1 29 89.7


User provided reference genes

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