Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.2e-65 253.1 132 100.0
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 3.0e-40 168.7 137 66.4
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 1.9e-39 166.0 131 69.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.4e-34 149.8 128 67.2
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.7e-33 145.6 104 71.2
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.4e-29 133.3 144 54.2
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.9e-26 122.9 118 55.1
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.9e-26 122.9 118 55.1
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 1.6e-25 119.8 121 60.3
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 1.0e-24 117.1 117 56.4
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.5e-23 113.2 117 54.7
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-23 113.2 115 53.0
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 2.6e-23 112.5 130 56.2
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 5.7e-23 111.3 120 52.5
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 2.2e-22 109.4 118 52.5
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 8.2e-22 107.5 121 52.9
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 8.2e-22 107.5 121 52.9
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 5.3e-21 104.8 118 50.0
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.2e-20 103.6 121 50.4
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 1.5e-20 103.2 128 49.2
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 2.0e-20 102.8 111 55.9
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 3.4e-20 102.1 125 50.4
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 7.7e-20 100.9 118 49.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 7.7e-20 100.9 119 50.4
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.0e-19 100.5 120 52.5
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-19 100.1 131 47.3
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 3.8e-19 98.6 129 47.3
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 6.5e-19 97.8 128 48.4
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 1.4e-18 96.7 132 44.7
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.4e-18 96.7 119 51.3
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 3.2e-18 95.5 118 50.8
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 3.2e-18 95.5 120 47.5
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 4.2e-18 95.1 120 47.5
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.5e-18 94.7 120 49.2
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 5.5e-18 94.7 117 51.3
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 9.4e-18 94.0 117 49.6
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.6e-17 93.2 120 47.5
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.1e-17 92.8 119 45.4
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.1e-17 92.8 119 45.4
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 6.1e-17 91.3 119 45.4
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 6.1e-17 91.3 116 52.6
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 8.0e-17 90.9 119 45.4
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 8.0e-17 90.9 119 47.1
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.4e-16 90.1 124 45.2
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.3e-16 89.4 119 42.0
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.0e-16 89.0 112 46.4
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 5.2e-16 88.2 129 41.1
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 5.2e-16 88.2 119 43.7
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 8.8e-16 87.4 122 43.4
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.8e-16 87.4 123 48.0
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.8e-16 87.4 125 45.6
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 8.8e-16 87.4 117 46.2
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 1.1e-15 87.0 127 42.5
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 1.5e-15 86.7 117 44.4
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.0e-15 86.3 118 44.1
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.6e-15 85.9 127 44.1
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.3e-15 85.5 115 48.7
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.7e-15 84.7 116 47.4
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 7.4e-15 84.3 118 43.2
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.4e-15 84.3 115 44.3
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.3e-14 83.6 118 43.2
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 1.3e-14 83.6 118 43.2
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.8e-14 82.4 114 43.9
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.7e-14 82.0 118 44.9
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 4.8e-14 81.6 104 47.1
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 4.8e-14 81.6 118 44.1
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 6.3e-14 81.3 112 43.8
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 8.2e-14 80.9 116 43.1
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 1.1e-13 80.5 118 44.1
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 1.1e-13 80.5 118 44.1
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.4e-13 79.3 125 42.4
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 2.4e-13 79.3 118 45.8
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.1e-13 79.0 121 44.6
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 3.1e-13 79.0 127 41.7
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 7.0e-13 77.8 119 40.3
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 7.0e-13 77.8 117 43.6
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.2e-12 77.0 134 37.3
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.2e-12 77.0 119 44.5
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.6e-12 76.6 119 42.9
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.0e-12 76.3 117 43.6
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.9e-12 74.7 120 45.0
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 7.7e-12 74.3 120 43.3
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.0e-11 73.9 124 37.9
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.3e-11 73.6 125 40.8
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-11 73.6 124 37.9
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 1.3e-11 73.6 115 40.9
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.7e-11 73.2 121 43.0
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 2.2e-11 72.8 124 37.9
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-11 72.8 124 37.9
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-11 72.8 124 37.9
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 2.2e-11 72.8 120 45.8
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.8e-11 72.0 122 45.9
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.8e-11 72.0 122 45.9
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.8e-11 72.0 124 37.1
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 3.8e-11 72.0 123 37.4
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.5e-11 71.2 114 37.7
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 1.1e-10 70.5 119 39.5
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.1e-10 70.5 119 41.2
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 1.9e-10 69.7 117 37.6
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 2.5e-10 69.3 127 40.9
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.2e-10 68.9 119 37.0
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.2e-10 67.8 133 37.6
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 7.2e-10 67.8 126 39.7
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 7.2e-10 67.8 126 39.7
Nn4g25678 Nelumbo nucifera HOM05D003529 ORTHO05D004106 1.6e-09 66.6 124 39.5
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.7e-09 65.9 118 36.4
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 3.6e-09 65.5 122 35.2
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 6.1e-09 64.7 122 41.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 1.0e-08 63.9 122 41.0
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.4e-08 63.5 114 33.3
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 2.3e-08 62.8 110 35.5
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 3.0e-08 62.4 102 41.2
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 4.0e-08 62.0 113 36.3
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 5.2e-08 61.6 125 38.4
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.2e-08 61.6 114 39.5
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 5.2e-08 61.6 118 41.5
CiPaw.08G092200 Carya illinoinensis HOM05D003529 ORTHO05D004106 6.7e-08 61.2 115 37.4
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 8.8e-08 60.8 125 38.4
Glyma.03G217700 Glycine max HOM05D003529 ORTHO05D004106 8.8e-08 60.8 113 36.3
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 8.8e-08 60.8 89 44.9
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 8.8e-08 60.8 119 32.8
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.2e-07 60.5 126 32.5
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.2e-07 60.5 104 42.3
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.5e-07 60.1 118 38.1
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 1.5e-07 60.1 96 39.6
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.5e-07 60.1 123 39.8
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-07 59.7 124 37.9
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 2.6e-07 59.3 125 36.8
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 3.3e-07 58.9 117 35.9
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 3.3e-07 58.9 117 35.9
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 4.4e-07 58.5 119 37.0
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 5.7e-07 58.2 115 36.5
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 5.7e-07 58.2 117 35.9
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 5.7e-07 58.2 115 36.5
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.7e-07 58.2 124 37.1
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 7.5e-07 57.8 125 32.8
Dinv33090 Davidia involucrata HOM05D003529 ORTHO05D004106 7.5e-07 57.8 115 33.9
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 7.5e-07 57.8 124 33.9
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 7.5e-07 57.8 134 32.8
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 9.7e-07 57.4 117 35.0
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 9.7e-07 57.4 112 36.6
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-06 57.0 124 36.3
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-06 57.0 124 36.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-06 57.0 124 36.3
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-06 57.0 124 37.1
TAR633G2691 Trochodendron aralioides HOM05D003529 ORTHO05D004106 1.3e-06 57.0 123 35.8
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.7e-06 56.6 123 35.0
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 2.2e-06 56.2 118 34.7
DCAR_025900 Daucus carota HOM05D004062 ORTHO05D004417 2.2e-06 56.2 66 45.5
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-06 56.2 121 36.4
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 2.2e-06 56.2 125 36.8
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 2.2e-06 56.2 118 33.9
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 2.2e-06 56.2 117 36.8
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 2.8e-06 55.8 121 34.7
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 3.7e-06 55.5 115 34.8
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 3.7e-06 55.5 118 34.7
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.7e-06 55.5 124 35.5
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 3.7e-06 55.5 118 33.9
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 3.7e-06 55.5 118 33.9
Cfa005855 Carpinus fangiana HOM05D003529 ORTHO05D004106 4.8e-06 55.1 123 37.4
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 4.8e-06 55.1 123 33.3
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 4.8e-06 55.1 128 37.5
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 4.8e-06 55.1 122 35.2
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 6.3e-06 54.7 118 36.4
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 6.3e-06 54.7 132 37.9


User provided reference genes

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