Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 5.8e-124 447.6 229 100.0
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.8e-102 375.6 232 81.0
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 7.6e-100 367.5 223 81.2
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.7e-99 366.3 223 79.4
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.5e-97 358.6 225 77.3
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 9.7e-95 350.5 224 77.2
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 3.7e-94 348.6 221 76.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 3.1e-93 345.5 222 75.2
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.3e-93 344.7 225 75.6
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.0e-93 344.0 225 75.6
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.0e-93 344.0 225 75.6
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 3.4e-92 342.0 222 74.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.7e-91 339.7 224 75.0
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.2e-91 339.3 225 74.2
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.9e-91 339.0 227 74.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.9e-91 339.0 222 73.9
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 3.8e-91 338.6 222 73.9
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 5.0e-91 338.2 223 73.5
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.5e-91 337.8 224 74.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 6.5e-91 337.8 226 72.1
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.1e-90 337.0 224 73.7
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.1e-90 337.0 221 72.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 4.2e-90 335.1 226 72.6
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 5.5e-90 334.7 224 71.9
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 9.4e-90 334.0 226 70.8
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.2e-89 333.6 220 74.5
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.6e-89 333.2 223 71.7
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.6e-89 333.2 224 71.4
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.1e-89 332.8 223 72.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.1e-89 332.8 223 76.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 4.6e-89 331.6 222 73.4
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 4.6e-89 331.6 223 70.0
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 7.9e-89 330.9 223 71.7
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.0e-88 330.5 228 69.7
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 3.0e-88 328.9 222 72.5
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 3.9e-88 328.6 220 72.3
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.9e-88 328.6 224 71.9
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 5.1e-88 328.2 227 71.8
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.1e-87 327.0 222 69.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.5e-87 326.6 223 74.0
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.0e-87 326.2 218 73.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.5e-87 325.9 226 68.6
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.5e-87 325.9 220 72.3
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 5.7e-87 324.7 218 72.9
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 9.7e-87 323.9 224 71.4
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.3e-86 323.6 223 72.6
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.3e-86 323.6 224 70.1
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-86 323.6 220 71.8
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.3e-86 323.6 220 71.8
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.7e-86 323.2 223 69.5
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 2.2e-86 322.8 227 66.5
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 2.2e-86 322.8 223 70.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.2e-86 322.8 220 71.4
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.2e-86 322.8 222 70.7
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.7e-86 322.0 222 71.2
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 3.7e-86 322.0 220 71.4
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 6.3e-86 321.2 219 71.2
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 6.3e-86 321.2 226 67.7
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 8.2e-86 320.9 219 72.1
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.4e-85 320.1 224 71.0
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.4e-85 319.3 224 70.1
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 3.1e-85 318.9 225 69.8
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.3e-85 318.2 227 66.1
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 6.9e-85 317.8 224 67.9
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 9.1e-85 317.4 225 70.2
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.2e-84 317.0 224 71.0
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.6e-84 315.8 224 70.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 5.9e-84 314.7 220 68.2
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 7.7e-84 314.3 225 72.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 7.7e-84 314.3 216 71.3
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.3e-83 313.5 282 61.7
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.7e-83 313.2 230 66.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 6.5e-83 311.2 227 70.0
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 2.5e-82 309.3 252 62.3
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 9.4e-82 307.4 228 63.6
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.2e-81 307.0 228 64.0
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.2e-81 307.0 199 75.4
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.2e-81 307.0 226 70.8
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.6e-81 305.4 228 64.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.6e-81 305.4 219 67.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-80 303.9 251 62.5
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.3e-80 302.8 228 62.7
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.0e-80 302.4 226 68.1
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 6.7e-80 301.2 228 64.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.1e-79 300.4 226 64.2
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 4.4e-79 298.5 228 61.8
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 4.4e-79 298.5 228 61.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.4e-79 298.5 256 59.8
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 9.7e-79 297.4 228 61.8
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.7e-78 295.4 228 61.0
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.7e-78 295.4 228 61.0
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 4.8e-78 295.0 196 73.0
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 8.2e-78 294.3 228 60.5
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-77 293.9 228 61.4
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.8e-77 293.1 226 65.5
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.4e-77 292.7 223 61.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.1e-77 290.8 224 66.1
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.1e-77 290.8 224 66.1
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 5.9e-76 288.1 192 74.0
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 7.7e-76 287.7 222 62.2
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 7.7e-76 287.7 223 59.6
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.7e-75 286.6 222 60.8
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.7e-75 286.6 192 70.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.1e-74 283.9 223 62.3
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.5e-74 282.7 222 61.3
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.2e-74 282.3 223 60.5
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.2e-74 282.3 223 60.5
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 3.2e-74 282.3 226 62.8
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.2e-74 282.0 224 63.8
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 5.5e-74 281.6 217 65.4
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 9.4e-74 280.8 223 60.1
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 9.4e-74 280.8 223 60.1
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 9.4e-74 280.8 223 60.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-73 280.4 196 69.4
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.7e-73 279.3 228 59.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 4.7e-73 278.5 222 59.5
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 1.4e-72 276.9 221 60.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-72 275.4 222 58.6
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.7e-70 270.0 226 61.9
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.7e-70 270.0 209 63.6
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 8.2e-70 267.7 188 69.7
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 2.9e-67 259.2 227 55.9
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 2.9e-67 259.2 227 55.9
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 4.2e-66 255.4 150 84.0
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.6e-65 253.4 223 58.3
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 8.0e-65 251.1 188 62.8
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 8.0e-65 251.1 204 57.8
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.0e-64 248.8 192 63.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 4.4e-63 245.4 199 56.8
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 5.7e-63 245.0 160 73.1
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.4e-61 240.4 150 76.7
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 5.9e-60 235.0 207 57.5
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.6e-57 226.9 157 69.4
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.4e-56 223.8 225 54.2
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.8e-56 223.4 232 54.7
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 6.8e-56 221.5 173 62.4
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.2e-54 216.5 173 61.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 8.3e-54 214.5 215 50.2
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.4e-53 211.8 215 49.8
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 7.2e-50 201.4 215 49.8
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.1e-49 198.4 225 50.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.4e-48 197.2 211 46.4
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.2e-45 184.5 143 55.2
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.3e-40 169.9 189 45.5
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 5.2e-40 168.7 120 65.8
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 8.9e-40 167.9 118 69.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 3.7e-38 162.5 120 64.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.5e-34 149.8 123 61.0
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 8.9e-32 141.4 90 75.6
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.9e-30 136.3 86 76.7
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.3e-27 127.5 147 42.9
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.9e-23 111.3 151 43.7
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.9e-23 111.3 151 43.7
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.1e-21 107.8 209 32.1
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-20 104.4 75 66.7
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 5.1e-19 99.0 65 76.9
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.4e-15 86.3 71 57.7
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.4e-15 86.3 101 49.5
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 9.9e-15 84.7 74 54.1
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 7.1e-13 78.6 48 72.9
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 2.9e-06 56.6 59 54.2
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 4.9e-06 55.8 38 65.8


User provided reference genes

Program Settings