Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 9.7e-83 310.1 153 100.0
SGA_v2.0_scaffold125G33692 Striga asiatica HOM05D037212 ORTHO05D027013 6.6e-31 137.9 72 88.9
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 2.7e-24 115.9 75 76.0
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 4.6e-24 115.2 75 77.3
SGA_v2.0_scaffold158G37482 Striga asiatica HOM05D037212 ORTHO05D027013 3.3e-22 109.0 63 82.5
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 8.1e-21 104.4 75 69.3
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 3.1e-20 102.4 75 69.3
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 2.6e-19 99.4 75 61.3
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 9.8e-19 97.4 73 69.9
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 1.7e-18 96.7 73 64.4
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 3.7e-18 95.5 73 60.3
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 1.2e-16 90.5 75 61.3
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.2e-16 90.5 75 61.3
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 2.7e-16 89.4 75 58.7
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 2.7e-16 89.4 75 60.0
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.5e-16 89.0 70 64.3
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.5e-16 89.0 70 64.3
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 4.6e-16 88.6 75 61.3
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 7.8e-16 87.8 75 58.7
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.0e-15 87.4 75 58.7
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 1.7e-15 86.7 75 58.7
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 1.7e-15 86.7 75 57.3
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 2.3e-15 86.3 75 57.3
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 2.3e-15 86.3 73 58.9
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 3.0e-15 85.9 73 54.8
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 3.0e-15 85.9 75 57.3
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 3.9e-15 85.5 75 57.3
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 5.1e-15 85.1 75 57.3
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 5.1e-15 85.1 75 57.3
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 5.1e-15 85.1 75 57.3
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 6.6e-15 84.7 75 53.3
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.6e-15 84.3 73 57.5
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 8.6e-15 84.3 75 56.0
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 1.5e-14 83.6 76 55.3
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.5e-14 83.6 69 62.3
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.5e-14 82.8 75 53.3
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 2.5e-14 82.8 64 62.5
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 2.5e-14 82.8 75 53.3
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 2.5e-14 82.8 75 54.7
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 2.5e-14 82.8 75 54.7
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 3.3e-14 82.4 75 56.0
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 4.3e-14 82.0 75 53.3
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 4.3e-14 82.0 75 56.0
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 5.6e-14 81.6 73 56.2
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 7.3e-14 81.3 75 53.3
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 7.3e-14 81.3 75 54.7
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 9.5e-14 80.9 75 53.3
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 9.5e-14 80.9 73 53.4
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 9.5e-14 80.9 75 52.0
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 9.5e-14 80.9 75 53.3
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.2e-13 80.5 73 54.8
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 1.6e-13 80.1 75 52.0
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 2.1e-13 79.7 70 55.7
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.8e-13 79.3 75 48.0
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 2.8e-13 79.3 64 57.8
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.7e-13 78.6 75 50.7
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 4.7e-13 78.6 75 50.7
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 4.7e-13 78.6 73 52.1
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 6.2e-13 78.2 67 59.7
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 6.2e-13 78.2 67 59.7
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 6.2e-13 78.2 67 59.7
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 6.2e-13 78.2 73 56.2
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 6.2e-13 78.2 73 50.7
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 6.2e-13 78.2 75 50.7
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 8.1e-13 77.8 75 52.0
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 8.1e-13 77.8 75 52.0
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 8.1e-13 77.8 64 62.5
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 8.1e-13 77.8 76 48.7
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 1.1e-12 77.4 64 62.5
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 1.1e-12 77.4 75 50.7
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.4e-12 77.0 75 48.0
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 1.8e-12 76.6 56 64.3
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 1.8e-12 76.6 56 64.3
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 1.8e-12 76.6 70 55.7
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 2.3e-12 76.3 70 54.3
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.3e-12 76.3 75 46.7
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 2.3e-12 76.3 73 46.6
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.3e-12 76.3 73 46.6
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.3e-12 76.3 73 46.6
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.3e-12 76.3 73 46.6
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.3e-12 76.3 73 46.6
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.3e-12 76.3 73 49.3
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 2.3e-12 76.3 70 55.7
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 3.1e-12 75.9 75 48.0
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 3.1e-12 75.9 75 52.0
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 3.1e-12 75.9 75 48.0
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 4.0e-12 75.5 64 59.4
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 4.0e-12 75.5 64 59.4
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 4.0e-12 75.5 75 52.0
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 4.0e-12 75.5 70 52.9
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 4.0e-12 75.5 75 50.7
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 5.2e-12 75.1 64 56.2
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 5.2e-12 75.1 75 50.7
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 5.2e-12 75.1 69 53.6
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 5.2e-12 75.1 69 52.2
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 5.2e-12 75.1 69 52.2
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 5.2e-12 75.1 64 56.2
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 6.8e-12 74.7 55 63.6
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.8e-12 74.7 70 52.9
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 8.9e-12 74.3 64 59.4
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 8.9e-12 74.3 56 60.7
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 8.9e-12 74.3 61 57.4
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 8.9e-12 74.3 64 54.7
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.2e-11 73.9 70 57.1
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 1.5e-11 73.6 79 48.1
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 3.4e-11 72.4 69 50.7
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 5.8e-11 71.6 72 48.6
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 7.6e-11 71.2 71 47.9
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 7.6e-11 71.2 70 51.4
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 7.6e-11 71.2 64 56.2
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 7.6e-11 71.2 72 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 9.9e-11 70.9 74 48.6
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 9.9e-11 70.9 64 51.6
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.3e-10 70.5 72 45.8
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.7e-10 70.1 56 57.1
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 1.7e-10 70.1 64 50.0
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.2e-10 69.7 63 50.8
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.2e-10 69.7 64 50.0
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.2e-10 69.7 69 52.2
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 2.9e-10 69.3 76 46.1
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 3.8e-10 68.9 62 51.6
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 3.8e-10 68.9 75 48.0
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 3.8e-10 68.9 75 48.0
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 3.8e-10 68.9 54 59.3
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 8.4e-10 67.8 64 54.7
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 1.4e-09 67.0 75 45.3
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 1.9e-09 66.6 71 45.1
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 4.1e-09 65.5 60 51.7
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 4.1e-09 65.5 78 43.6
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 5.4e-09 65.1 61 49.2
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 9.2e-09 64.3 60 50.0
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.2e-08 63.9 60 48.3
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.6e-08 63.5 61 49.2
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 1.6e-08 63.5 66 47.0
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 2.7e-08 62.8 67 41.8
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 6.0e-08 61.6 67 40.3
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 6.0e-08 61.6 74 41.9
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.7e-07 60.1 60 45.0
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 1.1e-06 57.4 62 45.2
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 9.6e-06 54.3 49 51.0


User provided reference genes

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