Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 3.0e-179 631.7 321 100.0
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 5.8e-138 494.6 356 73.0
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 4.9e-129 464.9 353 68.0
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 4.8e-124 448.4 356 64.6
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.8e-123 446.4 354 67.8
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 5.8e-122 441.4 356 64.0
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.7e-121 439.9 356 64.0
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 4.2e-120 435.3 355 64.8
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 5.5e-120 434.9 359 63.5
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 7.1e-120 434.5 356 63.8
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.2e-119 433.7 361 62.3
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.1e-119 433.0 356 63.2
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.7e-119 432.6 356 63.8
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 2.7e-119 432.6 354 63.3
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 6.0e-119 431.4 359 63.5
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.8e-118 429.9 356 62.6
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 4.3e-117 425.2 358 62.0
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 7.4e-117 424.5 359 62.1
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 7.4e-117 424.5 362 61.9
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 4.8e-116 421.8 357 60.8
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.8e-115 419.9 361 61.2
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 5.3e-115 418.3 356 62.1
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 6.9e-115 417.9 356 61.8
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.0e-114 416.4 361 61.5
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.6e-114 416.0 359 61.6
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.4e-114 415.6 361 61.2
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.5e-114 415.2 358 62.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.5e-114 415.2 358 62.0
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.5e-114 415.2 349 62.8
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 4.5e-114 415.2 357 58.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 5.8e-114 414.8 349 64.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.7e-113 413.3 389 57.8
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.2e-113 412.9 358 60.1
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 2.9e-113 412.5 357 60.8
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 2.9e-113 412.5 356 61.5
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.4e-112 410.2 355 61.1
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.9e-112 409.8 361 60.9
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 2.5e-112 409.5 350 62.0
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.2e-111 407.1 355 58.9
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 2.1e-111 406.4 357 60.2
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.5e-111 405.6 355 58.6
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 6.0e-111 404.8 360 59.7
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 6.0e-111 404.8 353 60.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 3.9e-110 402.1 356 59.3
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 6.7e-110 401.4 358 59.8
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 6.7e-110 401.4 360 59.7
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 8.7e-110 401.0 358 60.3
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 8.7e-110 401.0 360 59.2
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 1.5e-109 400.2 355 60.0
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.5e-109 399.4 361 58.7
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.5e-109 399.4 356 58.1
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 3.3e-109 399.1 360 59.2
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 5.7e-109 398.3 385 56.1
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 5.7e-109 398.3 361 59.0
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 7.4e-109 397.9 360 59.2
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 2.2e-108 396.4 357 58.8
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.8e-108 396.0 355 58.9
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 3.7e-108 395.6 361 58.2
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 4.8e-108 395.2 356 58.7
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 6.3e-108 394.8 358 59.8
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 8.2e-108 394.4 356 58.1
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.8e-107 393.3 350 59.7
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 3.1e-107 392.5 349 60.5
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 3.1e-107 392.5 361 57.9
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 5.3e-107 391.7 354 58.5
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 5.3e-107 391.7 350 59.4
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 9.0e-107 391.0 353 57.5
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.2e-106 390.6 359 59.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.0e-106 389.8 360 57.2
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 3.8e-105 385.6 357 58.3
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 5.0e-105 385.2 359 57.4
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.1e-104 384.0 355 58.3
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.4e-104 383.6 315 64.1
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 9.4e-104 380.9 357 58.8
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.8e-102 376.7 348 57.2
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.3e-102 376.3 360 55.8
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.5e-101 373.6 359 57.4
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.7e-101 371.7 329 58.7
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 1.3e-100 370.5 359 55.2
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.8e-100 368.6 348 56.0
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 4.8e-100 368.6 358 54.2
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 3.8e-97 359.0 359 55.4
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 4.2e-96 355.5 356 52.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 5.5e-96 355.1 329 58.4
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.2e-95 354.0 478 46.4
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 8.8e-94 347.8 354 52.8
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.6e-93 346.3 371 52.8
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.7e-93 345.1 367 52.9
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 5.7e-93 345.1 365 55.6
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 4.4e-85 318.9 355 48.2
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 7.5e-77 291.6 251 60.2
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 4.8e-76 288.9 257 56.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.4e-75 287.3 360 42.5
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.3e-73 280.8 253 59.7
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.9e-73 279.6 247 57.9
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 7.2e-72 275.0 387 40.3
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 2.1e-71 273.5 299 52.2
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 8.8e-70 268.1 363 39.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.5e-69 267.3 331 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.4e-67 260.0 357 42.0
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.9e-65 253.1 347 41.2
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.4e-62 244.2 201 58.7
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.3e-57 226.9 340 38.2
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.2e-55 221.1 353 38.0
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 3.4e-53 213.0 201 56.7
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.4e-53 212.6 340 37.9
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 3.5e-50 203.0 350 33.7
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.0e-49 201.4 359 34.8
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.3e-41 174.5 146 60.3
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.9e-38 161.8 145 61.4
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 2.9e-36 156.8 198 44.9
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 8.9e-30 135.2 175 44.6
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 3.2e-27 126.7 109 61.5
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 7.1e-27 125.6 105 61.9
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.3e-25 120.6 99 59.6
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.3e-23 114.8 406 28.1
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.1e-22 110.2 89 60.7
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.3e-20 104.8 96 57.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.3e-20 104.8 127 49.6
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.2e-20 104.0 361 26.9
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 1.2e-18 98.2 74 62.2
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.7e-17 94.4 101 51.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.6e-15 87.8 103 49.5
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 2.0e-13 80.9 51 68.6
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-13 80.1 78 56.4
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-13 80.1 86 54.7
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 8.4e-12 75.5 139 37.4
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 8.4e-12 75.5 139 37.4
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 4.6e-10 69.7 73 54.8
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 7.9e-10 68.9 111 42.3
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.8e-09 67.8 70 54.3
Cfa023857 Carpinus fangiana HOM05D057041 ORTHO05D018939 9.0e-06 55.5 200 23.5


User provided reference genes

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