Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00759 Striga asiatica HOM05D006358 ORTHO05D008185 2.7e-208 728.4 367 100.0
Migut.D00538 Erythranthe guttata HOM05D006358 ORTHO05D008185 8.9e-151 537.3 390 72.3
Cc01_g03170 Coffea canephora HOM05D006358 ORTHO05D008185 3.4e-142 508.8 320 76.2
Oeu058541.2 Olea europaea HOM05D006358 ORTHO05D008185 2.7e-139 499.2 456 59.6
Prupe.6G013900 Prunus persica HOM05D006358 ORTHO05D008185 5.1e-138 495.0 403 64.5
TAR633G2634 Trochodendron aralioides HOM05D006358 ORTHO05D008185 5.1e-138 495.0 376 67.8
Peaxi162Scf00192g00019 Petunia axillaris HOM05D006358 ORTHO05D008185 9.6e-137 490.7 320 73.8
Actinidia01838 Actinidia chinensis HOM05D006358 ORTHO05D008185 1.3e-136 490.3 320 75.0
Sopen01g002330 Solanum pennellii HOM05D006358 ORTHO05D008185 4.8e-136 488.4 312 75.6
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 6.2e-136 488.0 320 73.4
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 1.1e-135 487.3 313 74.8
Hma1.2p1_0050F.1_g029070 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 1.8e-135 486.5 320 74.1
Manes.03G089800 Manihot esculenta HOM05D006358 ORTHO05D008185 2.4e-135 486.1 320 72.8
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 6.9e-135 484.6 320 73.4
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 1.5e-134 483.4 320 72.5
Nitab4.5_0003436g0040 Nicotiana tabacum HOM05D006358 ORTHO05D008185 2.0e-134 483.0 320 72.8
QL01p009947 Quercus lobata HOM05D006358 ORTHO05D008185 2.0e-134 483.0 322 73.9
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 9.9e-134 480.7 319 74.0
vmacro21759 Vaccinium macrocarpon HOM05D006358 ORTHO05D008185 1.3e-133 480.3 306 75.8
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 8.4e-133 477.6 318 72.0
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 8.4e-133 477.6 320 72.8
HanXRQChr11g0345451 Helianthus annuus HOM05D006358 ORTHO05D008185 1.1e-132 477.2 319 70.8
VMungo0720G2736 Vigna mungo HOM05D006358 ORTHO05D008185 1.4e-132 476.9 320 71.9
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 2.4e-132 476.1 397 62.2
Ciclev10015496m.g Citrus clementina HOM05D006358 ORTHO05D008185 5.4e-132 474.9 320 71.6
Nitab4.5_0005041g0010 Nicotiana tabacum HOM05D006358 ORTHO05D008185 5.4e-132 474.9 337 69.4
Sc09g0000330 Simmondsia chinensis HOM05D006358 ORTHO05D008185 7.1e-132 474.6 310 73.5
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 2.1e-131 473.0 320 70.9
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 2.7e-131 472.6 321 73.5
Thecc.09G216800 Theobroma cacao HOM05D006358 ORTHO05D008185 2.7e-131 472.6 364 65.1
PSO339G4609 Papaver somniferum HOM05D006358 ORTHO05D008185 3.5e-131 472.2 320 70.9
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 4.6e-131 471.9 377 65.5
Potri.001G011700 Populus trichocarpa HOM05D006358 ORTHO05D008185 6.0e-131 471.5 320 70.9
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 7.9e-131 471.1 368 66.6
Lalb_Chr02g0144221 Lupinus albus HOM05D006358 ORTHO05D008185 1.8e-130 469.9 318 72.0
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 8.7e-130 467.6 320 70.9
CANSAT54G1685 Cannabis sativa HOM05D006358 ORTHO05D008185 1.9e-129 466.5 321 72.3
PGR119G1893 Punica granatum HOM05D006358 ORTHO05D008185 2.5e-129 466.1 320 70.3
EL10Ac4g10334 Beta vulgaris HOM05D006358 ORTHO05D008185 3.3e-129 465.7 320 70.9
COL.COLO4_10429 Corchorus olitorius HOM05D006358 ORTHO05D008185 3.3e-129 465.7 321 70.7
Lj5g0002595 Lotus japonicus HOM05D006358 ORTHO05D008185 4.3e-129 465.3 320 70.3
PSO384G4606 Papaver somniferum HOM05D006358 ORTHO05D008185 2.8e-128 462.6 320 69.4
TWI34G0094 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 2.8e-128 462.6 319 72.4
Sabra01G0008700 Salix brachista HOM05D006358 ORTHO05D008185 8.1e-128 461.1 341 68.0
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 2.4e-127 459.5 389 62.7
unitig_0.g179 Utricularia gibba HOM05D006358 ORTHO05D008185 2.4e-127 459.5 320 69.4
Gohir.A08G078500 Gossypium hirsutum HOM05D006358 ORTHO05D008185 9.0e-127 457.6 318 70.8
Gorai.004G092800 Gossypium raimondii HOM05D006358 ORTHO05D008185 9.0e-127 457.6 318 70.8
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 3.4e-126 455.7 320 69.4
Duzib150G0556 Durio zibethinus HOM05D006358 ORTHO05D008185 7.6e-126 454.5 318 70.1
Eucgr.B02608 Eucalyptus grandis HOM05D006358 ORTHO05D008185 9.9e-126 454.1 331 67.7
Aqoxy1G00024 Aquilegia oxysepala HOM05D006358 ORTHO05D008185 1.7e-125 453.4 321 69.5
CsaV3_4G023700 Cucumis sativus L. HOM05D006358 ORTHO05D008185 1.7e-125 453.4 319 70.2
Medtr1g116320 Medicago truncatula HOM05D006358 ORTHO05D008185 1.7e-125 453.4 320 69.1
TPR.G10386 Trifolium pratense HOM05D006358 ORTHO05D008185 8.4e-125 451.1 321 70.1
Lj2A674T44 Lonicera japonica HOM05D006358 ORTHO05D008185 6.0e-123 444.9 296 72.3
THA.LOC104810430 Tarenaya hassleriana HOM05D006358 ORTHO05D008185 3.0e-122 442.6 318 66.4
ClCG02G023710 Citrullus lanatus HOM05D006358 ORTHO05D008185 5.1e-122 441.8 319 68.7
CARHR041130 Cardamine hirsuta HOM05D006358 ORTHO05D008185 1.6e-120 436.8 320 66.2
Sp1g37840 Schrenkiella parvula HOM05D006358 ORTHO05D008185 2.1e-120 436.4 319 66.8
BcaB07g33557 Brassica carinata HOM05D006358 ORTHO05D008185 6.2e-120 434.9 319 67.1
A06p02670 Brassica napus HOM05D006358 ORTHO05D008185 1.1e-119 434.1 319 66.8
BcaC08g43281 Brassica carinata HOM05D006358 ORTHO05D008185 1.8e-119 433.3 319 67.1
C06p06310 Brassica napus HOM05D006358 ORTHO05D008185 1.8e-119 433.3 319 67.1
BolC6t35740H Brassica oleracea HOM05D006358 ORTHO05D008185 1.8e-119 433.3 319 67.1
BraA06t23476Z Brassica rapa HOM05D006358 ORTHO05D008185 2.4e-119 433.0 319 66.1
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 1.5e-118 430.3 361 63.4
Carub.0001s4002 Capsella rubella HOM05D006358 ORTHO05D008185 2.6e-118 429.5 318 65.1
AT1G51110 Arabidopsis thaliana HOM05D006358 ORTHO05D008185 4.5e-118 428.7 319 65.8
Thhalv10011532m.g Eutrema salsugineum HOM05D006358 ORTHO05D008185 7.6e-118 427.9 320 65.9
AL1G58910 Arabidopsis lyrata HOM05D006358 ORTHO05D008185 2.2e-117 426.4 319 65.5
FAN11G2908 Fragaria x ananassa HOM05D000259 ORTHO05D008185 2.2e-117 426.4 313 70.0
FAN25G3418 Fragaria x ananassa HOM05D000259 ORTHO05D008185 3.2e-116 422.5 365 62.5
Cpa.g.sc1127.2 Carica papaya HOM05D006358 ORTHO05D008185 5.5e-116 421.8 297 69.4
Hund07562 Selenicereus undatus HOM05D006358 ORTHO05D008185 2.7e-115 419.5 294 70.7
MELO3C014648.2 Cucumis melo HOM05D006358 ORTHO05D008185 4.6e-115 418.7 297 70.0
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 2.3e-114 416.4 346 61.3
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 2.8e-112 409.5 329 64.1
Ca_11387_v3 Cicer arietinum L. HOM05D006358 ORTHO05D008185 3.7e-112 409.1 270 72.6
AUR62019212 Chenopodium quinoa HOM05D006358 ORTHO05D008185 3.4e-110 402.5 269 73.6
Dinv36328 Davidia involucrata HOM05D006358 ORTHO05D008185 8.5e-109 397.9 347 62.8
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 1.1e-108 397.5 319 60.8
Lsat_1_v5_gn_1_68460 Lactuca sativa HOM05D006358 ORTHO05D008185 1.4e-108 397.1 396 55.6
Glyma.20G244500 Glycine max HOM05D006358 ORTHO05D008185 8.2e-104 381.3 320 59.7
AUR62000042 Chenopodium quinoa HOM05D006358 ORTHO05D008185 9.1e-103 377.9 297 65.3
CDE04G2070 Ceratophyllum demersum HOM05D006358 ORTHO05D008185 1.7e-101 373.6 305 61.3
Os07g0470700 Oryza sativa ssp. japonica HOM05D006358 ORTHO05D008185 2.3e-98 363.2 313 59.7
Sed0014420 Sechium edule HOM05D006358 ORTHO05D008185 5.7e-97 358.6 260 69.6
MBI06_g07792_MAGBIO Magnolia biondii HOM05D006358 ORTHO05D008185 8.2e-96 354.8 289 63.7
Atru.chr3.2139 Acer truncatum HOM05D006358 ORTHO05D008185 3.1e-95 352.8 220 79.1
Gohir.D08G088366 Gossypium hirsutum HOM05D006358 ORTHO05D008185 2.6e-94 349.7 237 74.3
Glyma.10G294800 Glycine max HOM05D006358 ORTHO05D008185 7.2e-92 341.7 244 66.4
Pp3c6_24510 Physcomitrium patens HOM05D006358 ORTHO05D008185 3.0e-90 336.3 320 52.8
Zm00001eb320130 Zea mays HOM05D006358 ORTHO05D008185 4.8e-88 328.9 313 54.6
Mapoly0065s0038 Marchantia polymorpha HOM05D006358 ORTHO05D008185 1.3e-85 320.9 322 50.6
Phvul.007G005400 Phaseolus vulgaris HOM05D006358 ORTHO05D008185 2.1e-83 313.5 320 51.2
FAN17G2784 Fragaria x ananassa HOM05D006358 ORTHO05D008185 7.7e-78 295.0 187 78.6
AagrBONN_evm.TU.Sc2ySwM_340.166 Anthoceros agrestis HOM05D006358 ORTHO05D008185 9.4e-76 288.1 327 47.1
QL01p009975 Quercus lobata HOM05D006358 ORTHO05D008185 3.6e-75 286.2 218 67.9
Atru.BG.108.p Acer truncatum HOM05D006358 ORTHO05D008185 5.2e-66 255.8 155 82.6
Nn2g15694 Nelumbo nucifera HOM05D006358 ORTHO05D008185 3.1e-63 246.5 319 44.5
Hma1.2p1_0535F.1_g173790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 9.5e-60 235.0 163 71.8
BcaB07g33599 Brassica carinata HOM05D006358 ORTHO05D008185 8.9e-58 228.4 146 78.8
SMO145G0194 Selaginella moellendorffii HOM05D006358 ORTHO05D008185 1.1e-52 211.5 158 67.7
Cre03.g176350 Chlamydomonas reinhardtii HOM05D006358 ORTHO05D008185 1.8e-50 204.1 355 37.5
SEGI_30485 Sequoiadendron giganteum HOM05D006358 ORTHO05D008185 1.9e-47 194.1 165 55.8
Hma1.2p1_0238F.1_g099790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 3.3e-36 156.8 103 70.9
BcaC08g43283 Brassica carinata HOM05D006358 ORTHO05D008185 1.4e-34 151.4 141 54.6
BolC6t35742H Brassica oleracea HOM05D006358 ORTHO05D008185 1.4e-34 151.4 141 54.6
Ah.06g193120 Amaranthus hybridus HOM05D000044 ORTHO05D000051 1.5e-33 147.9 103 65.0
C06p06330 Brassica napus HOM05D000466 ORTHO05D000331 4.9e-32 142.9 170 46.5
Cpa.g.sc1127.1 Carica papaya HOM05D006358 ORTHO05D008185 2.3e-29 134.0 187 41.2
TWI60G1657 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 2.5e-28 130.6 191 44.0
TWI34G1842 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 9.6e-28 128.6 93 71.0
MD03G1014600 Malus domestica HOM05D006358 ORTHO05D008185 1.4e-26 124.8 121 48.8
SEGI_10329 Sequoiadendron giganteum HOM05D006358 ORTHO05D008185 5.8e-25 119.4 95 63.2
MCO12G476 Micromonas commoda HOM05D006358 ORTHO05D008185 1.9e-20 104.4 133 45.1
HPP92_008465 Vanilla planifolia HOM05D006358 ORTHO05D008185 9.6e-20 102.1 111 45.0
CSS0022118 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 7.6e-17 92.4 59 69.5
SMO222G0017 Selaginella moellendorffii HOM05D006358 ORTHO05D008185 1.7e-16 91.3 192 37.5
CSS0000942 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 2.5e-12 77.4 50 68.0
CSS0018817 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 2.5e-12 77.4 47 80.9
Glyma.03G107232 Glycine max HOM05D006358 ORTHO05D000607 3.3e-12 77.0 82 51.2
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 2.1e-11 74.3 71 53.5
MCO09G399 Micromonas commoda HOM05D006358 ORTHO05D008185 6.9e-10 69.3 198 30.8
AagrBONN_evm.TU.Sc2ySwM_228.2193 Anthoceros agrestis HOM05D003483 ORTHO05D004101 5.5e-07 59.7 184 30.4
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 5.5e-07 59.7 173 27.2
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 5.5e-07 59.7 163 28.8
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 5.5e-07 59.7 163 28.8
Carub.0007s1908 Capsella rubella HOM05D002234 ORTHO05D002254 9.3e-07 58.9 198 27.8
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 1.2e-06 58.5 173 29.5
A01p13620 Brassica napus HOM05D002234 ORTHO05D002254 1.2e-06 58.5 195 26.7
BraA01t01304Z Brassica rapa HOM05D002234 ORTHO05D002254 1.2e-06 58.5 195 26.7
AL7G31390 Arabidopsis lyrata HOM05D002234 ORTHO05D002254 1.6e-06 58.2 195 26.2
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 1.6e-06 58.2 174 28.2
AT4G22240 Arabidopsis thaliana HOM05D002234 ORTHO05D002254 2.7e-06 57.4 195 26.2
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 2.7e-06 57.4 147 28.6
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 2.7e-06 57.4 174 28.7
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 2.7e-06 57.4 173 23.7
BcaC09g51148 Brassica carinata HOM05D002234 ORTHO05D002254 3.5e-06 57.0 195 26.2
BcaNung03751 Brassica carinata HOM05D002234 ORTHO05D002254 3.5e-06 57.0 195 26.7
C01p16500 Brassica napus HOM05D002234 ORTHO05D002254 3.5e-06 57.0 195 26.2
BolC1t01599H Brassica oleracea HOM05D002234 ORTHO05D002254 3.5e-06 57.0 195 26.2
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 3.5e-06 57.0 195 25.6
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 3.5e-06 57.0 179 29.6
CARHR229130 Cardamine hirsuta HOM05D002234 ORTHO05D002254 4.6e-06 56.6 195 25.6
Thhalv10025758m.g Eutrema salsugineum HOM05D002234 ORTHO05D002254 4.6e-06 56.6 195 25.6
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 4.6e-06 56.6 171 26.3
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 6.0e-06 56.2 176 27.8
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 6.0e-06 56.2 173 24.3
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 6.0e-06 56.2 175 26.3
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 7.9e-06 55.8 158 29.1
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 7.9e-06 55.8 176 27.3
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 7.9e-06 55.8 173 23.7


User provided reference genes

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