Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 5.7e-87 324.3 176 100.0
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 8.0e-49 197.6 180 62.2
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 9.2e-45 184.1 176 60.2
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 7.8e-44 181.0 176 61.4
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 2.3e-43 179.5 176 61.4
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 3.3e-42 175.6 176 56.8
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 8.1e-41 171.0 151 64.9
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 1.8e-40 169.9 180 56.7
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 5.2e-40 168.3 178 55.6
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 8.9e-40 167.5 152 60.5
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 2.6e-39 166.0 177 54.2
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 7.5e-39 164.5 148 62.2
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 1.3e-38 163.7 162 57.4
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 1.3e-38 163.7 182 54.9
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 2.2e-38 162.9 148 60.8
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 2.9e-38 162.5 148 61.5
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 4.9e-38 161.8 189 52.4
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 1.9e-37 159.8 155 55.5
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 1.9e-37 159.8 177 53.1
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 4.1e-37 158.7 153 57.5
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.2e-36 157.1 152 57.9
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 2.7e-36 156.0 181 53.0
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 2.7e-36 156.0 152 57.9
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 4.6e-36 155.2 149 58.4
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 4.6e-36 155.2 180 51.1
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 6.0e-36 154.8 159 55.3
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 6.0e-36 154.8 173 51.4
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 7.8e-36 154.5 184 52.7
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 1.0e-35 154.1 183 53.0
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 1.0e-35 154.1 146 56.8
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 1.0e-35 154.1 185 50.3
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 1.7e-35 153.3 148 56.1
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 1.7e-35 153.3 164 54.3
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 6.6e-35 151.4 176 47.2
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 8.6e-35 151.0 181 54.1
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 8.6e-35 151.0 163 55.2
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 8.6e-35 151.0 177 53.7
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.9e-34 149.8 174 47.1
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 2.5e-34 149.4 155 56.8
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 5.6e-34 148.3 171 51.5
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.2e-33 147.1 180 46.7
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 1.6e-33 146.7 146 52.1
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 1.1e-32 144.1 146 50.7
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 1.4e-32 143.7 145 60.7
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 1.8e-32 143.3 160 53.1
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 4.0e-32 142.1 170 50.0
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 8.9e-32 141.0 152 53.9
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.2e-31 140.6 181 47.0
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.2e-31 140.6 168 46.4
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 1.5e-31 140.2 181 48.1
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 3.4e-31 139.0 166 50.6
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 3.4e-31 139.0 102 71.6
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 5.8e-31 138.3 159 50.3
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 7.6e-31 137.9 147 50.3
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 2.2e-30 136.3 181 46.4
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 4.9e-30 135.2 174 47.1
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 6.4e-30 134.8 153 54.2
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 8.4e-30 134.4 147 49.7
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 1.1e-29 134.0 168 47.0
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 1.1e-29 134.0 118 68.6
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 1.9e-29 133.3 175 50.3
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 4.1e-29 132.1 154 57.8
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 9.2e-29 131.0 151 51.0
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 4.6e-28 128.6 182 47.3
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 4.6e-28 128.6 157 54.1
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 6.0e-28 128.3 150 47.3
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 1.0e-27 127.5 186 45.7
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 1.0e-27 127.5 150 56.0
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 1.7e-27 126.7 166 50.0
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 3.0e-27 125.9 205 40.5
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 3.9e-27 125.6 122 54.9
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 5.1e-27 125.2 117 63.2
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 1.1e-26 124.0 185 45.4
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 1.1e-26 124.0 165 49.1
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 1.1e-26 124.0 185 45.4
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 2.5e-26 122.9 165 44.8
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 2.5e-26 122.9 132 55.3
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 1.6e-25 120.2 177 45.2
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 2.8e-25 119.4 147 45.6
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 2.8e-25 119.4 133 53.4
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 6.9e-24 114.8 103 55.3
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 9.0e-24 114.4 205 42.9
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 2.0e-23 113.2 132 51.5
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 2.0e-23 113.2 103 62.1
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 5.8e-23 111.7 168 44.6
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 2.2e-22 109.8 114 58.8
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 1.6e-20 103.6 113 51.3
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 3.5e-20 102.4 110 50.9
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.4e-16 90.5 128 43.8
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 5.8e-15 85.1 111 45.0
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 2.2e-14 83.2 56 76.8
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 1.1e-13 80.9 122 45.1
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 5.1e-11 72.0 56 64.3
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 3.7e-09 65.9 55 61.8
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 8.1e-09 64.7 113 35.4
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 4.5e-07 58.9 67 49.3
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 2.9e-06 56.2 90 38.9


User provided reference genes

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