Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00666 Striga asiatica HOM05D007636 ORTHO05D003796 2.8e-230 801.6 399 100.0
SGA_v2.0_scaffold1G00731 Striga asiatica HOM05D007636 ORTHO05D003796 2.0e-111 406.8 266 81.2
SGA_v2.0_scaffold135G34844 Striga asiatica HOM05D007636 ORTHO05D003796 6.2e-73 278.9 328 50.3
SGA_v2.0_scaffold135G34846 Striga asiatica HOM05D007636 ORTHO05D003796 1.1e-69 268.1 239 59.4
SGA_v2.0_scaffold15G07271 Striga asiatica HOM05D007636 ORTHO05D003796 3.0e-67 260.0 249 59.4
SGA_v2.0_scaffold18G08273 Striga asiatica HOM05D007636 ORTHO05D003796 2.5e-37 160.6 149 53.7
SGA_v2.0_scaffold40G15410 Striga asiatica HOM05D007636 ORTHO05D003796 8.8e-27 125.6 187 40.6
SGA_v2.0_scaffold18G08354 Striga asiatica HOM05D007636 ORTHO05D003796 6.3e-25 119.4 244 37.7
SGA_v2.0_scaffold25G10851 Striga asiatica HOM05D007636 ORTHO05D003796 2.7e-20 104.0 153 38.6
SGA_v2.0_scaffold25G10881 Striga asiatica HOM05D007636 ORTHO05D003796 2.7e-20 104.0 153 38.6
SGA_v2.0_scaffold18G08415 Striga asiatica HOM05D007636 ORTHO05D003796 3.1e-16 90.5 162 36.4
Peaxi162Scf00493g00439 Petunia axillaris HOM05D008149 ORTHO05D010130 1.2e-15 88.6 338 26.3
Solyc01g021730.2 Solanum lycopersicum HOM05D007636 ORTHO05D003796 1.7e-14 84.7 160 32.5
Sopen01g016580 Solanum pennellii HOM05D007636 ORTHO05D003796 1.7e-14 84.7 160 32.5
Lj8P727T21 Lonicera japonica HOM05D014435 ORTHO05D000952 2.2e-14 84.3 154 36.4
Nitab4.5_0004323g0060 Nicotiana tabacum HOM05D007636 ORTHO05D003796 2.2e-14 84.3 166 33.1
Peaxi162Scf01007g00210 Petunia axillaris HOM05D009491 ORTHO05D003796 6.5e-14 82.8 446 20.9
PGSC0003DMG400025062 Solanum tuberosum HOM05D007636 ORTHO05D003796 1.5e-13 81.6 160 31.9
Sopen04g028190 Solanum pennellii HOM05D007636 ORTHO05D003796 2.5e-13 80.9 182 31.3
Sopen04g028210 Solanum pennellii HOM05D007636 ORTHO05D003796 3.2e-13 80.5 160 31.2
Sopen04g028280 Solanum pennellii HOM05D007636 ORTHO05D003796 3.2e-13 80.5 182 31.3
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 4.2e-13 80.1 113 42.5
MELO3C027409.2 Cucumis melo HOM05D002630 ORTHO05D000952 9.5e-13 79.0 153 35.9
PGSC0003DMG400025060 Solanum tuberosum HOM05D007636 ORTHO05D003796 9.5e-13 79.0 157 31.8
Nitab4.5_0003386g0050 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.2e-12 78.6 152 32.2
Sopen04g028020 Solanum pennellii HOM05D007636 ORTHO05D003796 1.2e-12 78.6 158 32.9
Nitab4.5_0012115g0020 Nicotiana tabacum HOM05D007636 ORTHO05D003796 1.6e-12 78.2 165 33.3
PGSC0003DMG400031146 Solanum tuberosum HOM05D007636 ORTHO05D003796 1.6e-12 78.2 157 31.8
Lj8P727T20 Lonicera japonica HOM05D014435 ORTHO05D000952 2.1e-12 77.8 169 34.3
Cfa010188 Carpinus fangiana HOM05D002630 ORTHO05D000952 2.7e-12 77.4 156 34.0
Lj8P728T9 Lonicera japonica HOM05D014435 ORTHO05D000952 2.7e-12 77.4 166 34.3
Nitab4.5_0014265g0010 Nicotiana tabacum HOM05D007636 ORTHO05D003796 3.6e-12 77.0 163 31.3
CAN.G616.26 Capsicum annuum HOM05D009491 ORTHO05D003796 4.7e-12 76.6 154 27.9
CsaV3_4G025380 Cucumis sativus L. HOM05D002630 ORTHO05D000952 6.1e-12 76.3 154 34.4
Lj8P728T8 Lonicera japonica HOM05D014435 ORTHO05D000952 6.1e-12 76.3 165 33.9
SGA_v2.0_scaffold20G09122 Striga asiatica HOM05D007636 ORTHO05D003796 6.1e-12 76.3 145 35.2
SGA_v2.0_scaffold467G52042 Striga asiatica HOM05D007636 ORTHO05D003796 8.0e-12 75.9 220 29.1
Lj8P730T30 Lonicera japonica HOM05D014435 ORTHO05D000952 1.0e-11 75.5 166 34.9
Nitab4.5_0000016g0580 Nicotiana tabacum HOM05D010426 ORTHO05D003796 1.0e-11 75.5 152 34.9
Nitab4.5_0001745g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.0e-11 75.5 152 30.9
Peaxi162Scf00244g00076 Petunia axillaris HOM05D008050 ORTHO05D003796 1.4e-11 75.1 202 30.2
Lj5P158T23 Lonicera japonica HOM05D014435 ORTHO05D000952 1.8e-11 74.7 152 34.2
Nitab4.5_0001670g0030 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.8e-11 74.7 152 30.9
Haze_23576 Corylus avellana HOM05D002630 ORTHO05D000952 2.3e-11 74.3 157 33.8
CsaV3_1G044320 Cucumis sativus L. HOM05D002630 ORTHO05D000952 2.3e-11 74.3 153 33.3
Lj8P729T8 Lonicera japonica HOM05D014435 ORTHO05D000952 3.0e-11 73.9 166 34.3
CAN.G358.103 Capsicum annuum HOM05D007636 ORTHO05D003796 5.2e-11 73.2 161 34.2
Nitab4.5_0001745g0030 Nicotiana tabacum HOM05D008050 ORTHO05D003796 6.8e-11 72.8 147 31.3
CAN.G135.83 Capsicum annuum HOM05D008050 ORTHO05D003796 8.8e-11 72.4 153 32.0
Nitab4.5_0022592g0010 Nicotiana tabacum HOM05D009491 ORTHO05D003796 8.8e-11 72.4 155 27.7
Peaxi162Scf00811g00013 Petunia axillaris HOM05D007636 ORTHO05D003796 8.8e-11 72.4 160 32.5
Peaxi162Scf00811g00023 Petunia axillaris HOM05D007636 ORTHO05D003796 8.8e-11 72.4 160 32.5
Peaxi162Scf02167g00001 Petunia axillaris HOM05D007636 ORTHO05D003796 8.8e-11 72.4 160 32.5
ClCG07G002360 Citrullus lanatus HOM05D002630 ORTHO05D000952 1.2e-10 72.0 154 33.1
Nitab4.5_0001463g0090 Nicotiana tabacum HOM05D007636 ORTHO05D003796 1.2e-10 72.0 160 31.9
Nitab4.5_0002723g0030 Nicotiana tabacum HOM05D007636 ORTHO05D003796 1.2e-10 72.0 157 29.9
Nitab4.5_0000016g0530 Nicotiana tabacum HOM05D010426 ORTHO05D003796 1.5e-10 71.6 152 33.6
Nitab4.5_0009210g0020 Nicotiana tabacum HOM05D009491 ORTHO05D003796 1.5e-10 71.6 154 27.9
CAN.G616.30 Capsicum annuum HOM05D009491 ORTHO05D003796 2.0e-10 71.2 181 25.4
MELO3C009980.2 Cucumis melo HOM05D002630 ORTHO05D000952 2.0e-10 71.2 154 32.5
Nitab4.5_0001366g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 2.0e-10 71.2 152 31.6
Nitab4.5_0003111g0070 Nicotiana tabacum HOM05D009491 ORTHO05D003796 2.0e-10 71.2 154 27.9
Nitab4.5_0009087g0010 Nicotiana tabacum HOM05D009491 ORTHO05D003796 2.0e-10 71.2 154 27.9
PGSC0003DMG400031147 Solanum tuberosum HOM05D007636 ORTHO05D003796 2.0e-10 71.2 158 29.1
CAN.G894.4 Capsicum annuum HOM05D008050 ORTHO05D003796 2.6e-10 70.9 175 29.7
Nitab4.5_0002608g0030 Nicotiana tabacum HOM05D009491 ORTHO05D003796 2.6e-10 70.9 154 27.3
Nitab4.5_0000499g0070 Nicotiana tabacum HOM05D008050 ORTHO05D003796 3.4e-10 70.5 148 31.1
Nitab4.5_0024412g0010 Nicotiana tabacum HOM05D009491 ORTHO05D003796 3.4e-10 70.5 150 27.3
Nitab4.5_0002160g0040 Nicotiana tabacum HOM05D009491 ORTHO05D003796 4.4e-10 70.1 156 28.2
Nitab4.5_0008734g0010 Nicotiana tabacum HOM05D007636 ORTHO05D003796 4.4e-10 70.1 163 30.7
Nitab4.5_0007033g0040 Nicotiana tabacum HOM05D007636 ORTHO05D003796 5.7e-10 69.7 163 31.9
Nitab4.5_0013311g0020 Nicotiana tabacum HOM05D008050 ORTHO05D003796 5.7e-10 69.7 151 29.1
PGSC0003DMG400007065 Solanum tuberosum HOM05D008050 ORTHO05D003796 5.7e-10 69.7 155 31.6
PGSC0003DMG400025061 Solanum tuberosum HOM05D007636 ORTHO05D003796 5.7e-10 69.7 160 29.4
Nitab4.5_0008055g0030 Nicotiana tabacum HOM05D007636 ORTHO05D003796 9.8e-10 68.9 150 30.7
CAN.G895.29 Capsicum annuum HOM05D007636 ORTHO05D003796 1.7e-09 68.2 149 32.2
MELO3C030697.2 Cucumis melo HOM05D002630 ORTHO05D000952 1.7e-09 68.2 154 31.2
Nitab4.5_0000016g0600 Nicotiana tabacum HOM05D007636 ORTHO05D003796 1.7e-09 68.2 166 29.5
COL.COLO4_33115 Corchorus olitorius HOM05D002630 ORTHO05D000952 2.2e-09 67.8 157 31.2
Solyc10g079220.2 Solanum lycopersicum HOM05D008149 ORTHO05D010130 3.7e-09 67.0 150 32.7
CAN.G78.33 Capsicum annuum HOM05D008050 ORTHO05D003796 6.3e-09 66.2 151 28.5
FAN11G3018 Fragaria x ananassa HOM05D002630 ORTHO05D000952 6.3e-09 66.2 154 29.9
Nitab4.5_0008515g0010 Nicotiana tabacum HOM05D010426 ORTHO05D003796 6.3e-09 66.2 152 31.6
Nitab4.5_0001745g0020 Nicotiana tabacum HOM05D008050 ORTHO05D003796 8.3e-09 65.9 145 29.0
Nitab4.5_0003562g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 8.3e-09 65.9 163 33.1
ClCG07G002020 Citrullus lanatus HOM05D002630 ORTHO05D000952 1.1e-08 65.5 145 33.8
FvH4_3g18940 Fragaria vesca HOM05D002630 ORTHO05D000952 1.1e-08 65.5 154 31.2
Peaxi162Scf00111g00145 Petunia axillaris HOM05D008050 ORTHO05D003796 2.4e-08 64.3 161 31.7
RcHm_v2.0_Chr3g0452871 Rosa chinensis HOM05D028547 ORTHO05D000952 2.4e-08 64.3 156 29.5
FAN11G3586 Fragaria x ananassa HOM05D002630 ORTHO05D000952 4.1e-08 63.5 155 28.4
FAN21G1107 Fragaria x ananassa HOM05D002630 ORTHO05D000952 4.1e-08 63.5 155 29.0
Nitab4.5_0000016g0520 Nicotiana tabacum HOM05D007636 ORTHO05D003796 4.1e-08 63.5 153 26.8
Nitab4.5_0001463g0100 Nicotiana tabacum HOM05D007636 ORTHO05D003796 4.1e-08 63.5 153 31.4
FAN25G2891 Fragaria x ananassa HOM05D002630 ORTHO05D000952 5.4e-08 63.2 155 29.0
Nitab4.5_0002471g0020 Nicotiana tabacum HOM05D008050 ORTHO05D003796 7.0e-08 62.8 125 32.0
Lj5g0010861 Lotus japonicus HOM05D002630 ORTHO05D000952 9.2e-08 62.4 146 28.8
Nitab4.5_0000082g0040 Nicotiana tabacum HOM05D008149 ORTHO05D010130 9.2e-08 62.4 164 30.5
Nitab4.5_0010957g0020 Nicotiana tabacum HOM05D008149 ORTHO05D010130 1.2e-07 62.0 164 30.5
PGSC0003DMG400000154 Solanum tuberosum HOM05D009491 ORTHO05D003796 1.2e-07 62.0 153 24.8
Atru.chr5.447 Acer truncatum HOM05D002630 ORTHO05D000952 1.6e-07 61.6 154 31.2
Nitab4.5_0000293g0080 Nicotiana tabacum HOM05D010426 ORTHO05D003796 1.6e-07 61.6 152 31.6
Nitab4.5_0007586g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.6e-07 61.6 153 30.7
Nitab4.5_0015616g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.6e-07 61.6 153 30.1
Nitab4.5_0023007g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 1.6e-07 61.6 152 28.3
Nitab4.5_0008183g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 2.0e-07 61.2 152 30.3
Peaxi162Scf01007g00022 Petunia axillaris HOM05D009491 ORTHO05D003796 2.0e-07 61.2 161 26.1
Peaxi162Scf01007g00024 Petunia axillaris HOM05D009491 ORTHO05D003796 2.0e-07 61.2 161 26.1
Sopen01g038300 Solanum pennellii HOM05D009491 ORTHO05D003796 2.0e-07 61.2 126 31.0
EL10Ac7g16213 Beta vulgaris HOM05D010810 ORTHO05D018537 2.7e-07 60.8 167 29.9
EL10Ac7g16201 Beta vulgaris HOM05D010810 ORTHO05D018537 3.5e-07 60.5 167 29.9
Nitab4.5_0001874g0070 Nicotiana tabacum HOM05D008149 ORTHO05D010130 3.5e-07 60.5 162 29.6
Nitab4.5_0010159g0010 Nicotiana tabacum HOM05D008050 ORTHO05D003796 4.5e-07 60.1 153 29.4
EL10Ac7g16211 Beta vulgaris HOM05D010810 ORTHO05D018537 5.9e-07 59.7 154 30.5
Gohir.D10G225766 Gossypium hirsutum HOM05D012661 ORTHO05D000952 1.0e-06 58.9 143 30.1
Gohir.D10G225799 Gossypium hirsutum HOM05D012661 ORTHO05D000952 1.0e-06 58.9 143 30.1
Gohir.D10G225832 Gossypium hirsutum HOM05D012661 ORTHO05D000952 1.0e-06 58.9 143 30.1
Solyc07g062240.1 Solanum lycopersicum HOM05D007636 ORTHO05D000952 1.0e-06 58.9 155 27.7
CAN.G1095.3 Capsicum annuum HOM05D000069 ORTHO05D010130 1.7e-06 58.2 162 34.0
CAN.G895.31 Capsicum annuum HOM05D007636 ORTHO05D003796 1.7e-06 58.2 149 30.2
Gorai.011G257000 Gossypium raimondii HOM05D012661 ORTHO05D000952 1.7e-06 58.2 143 30.1
CAN.G1574.3 Capsicum annuum HOM05D007636 ORTHO05D003796 2.3e-06 57.8 138 29.7
CAN.G375.39 Capsicum annuum HOM05D007636 ORTHO05D003796 2.3e-06 57.8 141 31.2
Atru.chr1.1697 Acer truncatum HOM05D002630 ORTHO05D000952 2.9e-06 57.4 156 27.6
CAN.G1424.7 Capsicum annuum HOM05D008050 ORTHO05D003796 2.9e-06 57.4 90 37.8
COL.COLO4_38395 Corchorus olitorius HOM05D012661 ORTHO05D000952 2.9e-06 57.4 148 32.4
CAN.G641.1 Capsicum annuum HOM05D008149 ORTHO05D010130 3.8e-06 57.0 162 30.9
CAN.G641.16 Capsicum annuum HOM05D008149 ORTHO05D010130 3.8e-06 57.0 162 30.9
Nitab4.5_0011488g0010 Nicotiana tabacum HOM05D007636 ORTHO05D003796 3.8e-06 57.0 134 27.6
FAN13G0304 Fragaria x ananassa HOM05D010397 ORTHO05D000952 6.6e-06 56.2 155 30.3
RcHm_v2.0_Chr6g0266631 Rosa chinensis HOM05D002630 ORTHO05D000952 6.6e-06 56.2 159 30.8
Sopen11g011600 Solanum pennellii HOM05D007636 ORTHO05D003796 8.6e-06 55.8 143 26.6


User provided reference genes

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