Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00664 Striga asiatica HOM05D007918 ORTHO05D010025 8.2e-73 276.9 138 100.0
SalBow4G0315 Salvia bowleyana HOM05D007918 ORTHO05D010025 4.1e-32 141.7 128 59.4
SGA_v2.0_scaffold138G35181 Striga asiatica HOM05D007918 ORTHO05D010025 6.6e-30 134.4 103 66.0
Migut.D00482 Erythranthe guttata HOM05D007918 ORTHO05D010025 5.4e-24 114.8 112 55.4
Oeu015438.1 Olea europaea HOM05D007918 ORTHO05D010025 2.9e-22 109.0 111 52.3
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 7.8e-15 84.3 119 42.9
Hma1.2p1_2127F.1_g314650 Hydrangea macrophylla HOM05D007918 ORTHO05D010025 1.0e-14 84.0 103 48.5
Rhsim01G0260000 Rhododendron simsii HOM05D007918 ORTHO05D010025 2.3e-14 82.8 73 54.8
Cc01_g17750 Coffea canephora HOM05D007918 ORTHO05D010025 1.1e-13 80.5 103 46.6
Manes.13G039200 Manihot esculenta HOM05D007918 ORTHO05D010025 1.5e-13 80.1 73 54.8
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 2.5e-13 79.3 112 42.9
PGSC0003DMG400008578 Solanum tuberosum HOM05D007918 ORTHO05D010025 3.3e-13 79.0 112 42.9
TAR362G0051 Trochodendron aralioides HOM05D007918 ORTHO05D010025 3.3e-13 79.0 86 46.5
Atru.chr5.1868 Acer truncatum HOM05D007918 ORTHO05D010025 4.3e-13 78.6 115 39.1
CiPaw.03G271500 Carya illinoinensis HOM05D007918 ORTHO05D010025 4.3e-13 78.6 79 53.2
Sopen09g025600 Solanum pennellii HOM05D000691 ORTHO05D000378 5.6e-13 78.2 79 51.9
Solyc09g064460.1 Solanum lycopersicum HOM05D007918 ORTHO05D010025 7.3e-13 77.8 86 47.7
Thecc.01G249400 Theobroma cacao HOM05D007918 ORTHO05D010025 9.5e-13 77.4 84 50.0
Glyma.03G167700 Glycine max HOM05D007918 ORTHO05D010025 1.2e-12 77.0 103 42.7
Lj1g0000049 Lotus japonicus HOM05D007918 ORTHO05D010025 4.7e-12 75.1 113 37.2
Actinidia23702 Actinidia chinensis HOM05D007918 ORTHO05D010025 6.2e-12 74.7 73 53.4
Sabra02G0194600 Salix brachista HOM05D007918 ORTHO05D010025 8.1e-12 74.3 83 51.8
TWI12G1379 Tripterygium wilfordii HOM05D007918 ORTHO05D010025 8.1e-12 74.3 86 45.3
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.1e-11 73.9 71 53.5
TPR.G29178 Trifolium pratense HOM05D007918 ORTHO05D010025 1.1e-11 73.9 98 39.8
Medtr7g098680 Medicago truncatula HOM05D007918 ORTHO05D010025 2.3e-11 72.8 75 48.0
Eucgr.K01423 Eucalyptus grandis HOM05D007918 ORTHO05D010025 6.8e-11 71.2 105 40.0
Glyma.19G168900 Glycine max HOM05D007918 ORTHO05D010025 6.8e-11 71.2 73 49.3
Lalb_Chr25g0289821 Lupinus albus HOM05D007918 ORTHO05D010025 1.2e-10 70.5 111 37.8
Potri.002G256100 Populus trichocarpa HOM05D007918 ORTHO05D010025 1.5e-10 70.1 75 48.0
Gorai.001G237300 Gossypium raimondii HOM05D007918 ORTHO05D010025 2.0e-10 69.7 96 39.6
Phvul.001G165400 Phaseolus vulgaris HOM05D007918 ORTHO05D010025 2.0e-10 69.7 100 38.0
QL09p041632 Quercus lobata HOM05D007918 ORTHO05D010025 2.6e-10 69.3 109 38.5
COL.COLO4_02903 Corchorus olitorius HOM05D007918 ORTHO05D010025 3.4e-10 68.9 74 48.6
Lsat_1_v5_gn_0_19161 Lactuca sativa HOM05D007918 ORTHO05D010025 4.4e-10 68.6 97 43.3
Nn1g03000 Nelumbo nucifera HOM05D007918 ORTHO05D010025 4.4e-10 68.6 101 38.6
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 5.8e-10 68.2 63 57.1
Gohir.A07G203900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 5.8e-10 68.2 78 43.6
Lsat_1_v5_gn_8_91021 Lactuca sativa HOM05D007918 ORTHO05D010025 5.8e-10 68.2 98 41.8
MD05G1187800 Malus domestica HOM05D007918 ORTHO05D010025 7.5e-10 67.8 88 42.0
AUR62008804 Chenopodium quinoa HOM05D000474 ORTHO05D001061 9.8e-10 67.4 92 45.7
Gohir.D07G209900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 9.8e-10 67.4 78 43.6
HanXRQChr04g0107631 Helianthus annuus HOM05D007918 ORTHO05D010025 9.8e-10 67.4 113 37.2
Manes.12G038300 Manihot esculenta HOM05D007918 ORTHO05D010025 1.3e-09 67.0 77 45.5
VMungo1383G2778 Vigna mungo HOM05D007918 ORTHO05D010025 2.9e-09 65.9 105 37.1
ClCG06G001390 Citrullus lanatus HOM05D007918 ORTHO05D010025 3.7e-09 65.5 60 55.0
unitig_22.g6306 Utricularia gibba HOM05D007918 ORTHO05D010025 8.3e-09 64.3 92 40.2
Duzib211G0621 Durio zibethinus HOM05D007918 ORTHO05D010025 1.1e-08 63.9 82 40.2
FAN15G1752 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.1e-08 63.9 80 46.2
FAN24G2847 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.1e-08 63.9 82 46.3
TPR.G20079 Trifolium pratense HOM05D007918 ORTHO05D010025 1.1e-08 63.9 89 39.3
CsaV3_6G007330 Cucumis sativus L. HOM05D007918 ORTHO05D010025 1.4e-08 63.5 60 53.3
Sc05g0002860 Simmondsia chinensis HOM05D007918 ORTHO05D010025 1.4e-08 63.5 81 42.0
FvH4_2g20371 Fragaria vesca HOM05D007918 ORTHO05D010025 4.1e-08 62.0 73 47.9
Cpa.g.sc87.38 Carica papaya HOM05D007918 ORTHO05D010025 9.2e-08 60.8 105 36.2
Prupe.8G214800 Prunus persica HOM05D007918 ORTHO05D010025 1.6e-07 60.1 81 44.4
Ah.08g213630 Amaranthus hybridus HOM05D000474 ORTHO05D001061 2.1e-07 59.7 52 57.7
DCAR_000468 Daucus carota HOM05D000121 ORTHO05D000102 3.5e-07 58.9 71 46.5
Lalb_Chr20g0113551 Lupinus albus HOM05D007918 ORTHO05D010025 4.6e-07 58.5 67 46.3
FAN27G3434 Fragaria x ananassa HOM05D007918 ORTHO05D010025 6.0e-07 58.2 80 45.0
Sed0001064 Sechium edule HOM05D007918 ORTHO05D010025 7.8e-07 57.8 59 52.5
Gohir.D07G159200 Gossypium hirsutum HOM05D007918 ORTHO05D010025 6.6e-06 54.7 112 33.0


User provided reference genes

Program Settings