Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 0.0e+00 1786.5 882 100.0
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 4.3e-292 1008.1 814 65.5
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.9e-287 992.6 810 63.8
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.1e-282 976.9 825 62.9
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.0e-253 880.6 811 57.6
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.5e-236 823.5 841 53.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 2.9e-232 809.3 831 53.1
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 3.0e-229 799.3 820 54.0
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 8.8e-229 797.7 820 53.8
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 1.5e-228 797.0 816 53.4
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 1.5e-228 797.0 815 53.1
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 3.7e-227 792.3 879 50.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 4.8e-227 792.0 816 52.1
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.1e-226 789.3 845 52.3
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.6e-225 786.9 824 51.9
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 2.9e-224 782.7 814 52.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 5.5e-223 778.5 817 51.4
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.7e-222 776.2 815 52.3
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 4.7e-222 775.4 816 51.5
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 6.1e-222 775.0 815 51.7
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 6.1e-222 775.0 825 51.8
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 8.0e-222 774.6 815 51.5
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.8e-221 773.5 813 51.0
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 3.0e-221 772.7 815 52.0
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 3.0e-221 772.7 890 48.3
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 4.0e-221 772.3 845 50.9
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 2.6e-220 769.6 833 51.1
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 2.6e-220 769.6 815 51.4
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 2.6e-220 769.6 818 51.8
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.6e-220 769.6 813 51.7
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 7.5e-220 768.1 817 51.4
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 9.8e-220 767.7 802 52.2
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 1.1e-218 764.2 814 52.2
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.6e-217 760.4 825 50.7
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 5.9e-217 758.4 820 50.7
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.3e-216 757.3 730 55.1
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 1.3e-216 757.3 811 50.8
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.8e-216 755.7 812 52.3
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 3.8e-216 755.7 800 52.0
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 6.5e-216 755.0 816 50.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 6.5e-216 755.0 819 50.3
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.1e-215 754.2 818 50.7
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 9.5e-215 751.1 820 49.9
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.1e-214 750.0 846 49.6
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.8e-214 749.6 832 51.1
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 4.7e-214 748.8 819 50.1
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.0e-213 745.7 846 48.9
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.2e-213 745.3 848 48.8
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 8.8e-213 744.6 867 48.0
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 8.8e-213 744.6 849 48.9
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.2e-212 744.2 810 50.9
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 1.2e-212 744.2 750 53.5
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.7e-211 740.3 808 51.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 1.7e-211 740.3 810 49.9
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.4e-210 737.3 790 51.3
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.4e-210 736.5 739 54.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.2e-209 734.2 809 50.8
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 1.6e-209 733.8 809 50.4
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 7.8e-209 731.5 823 50.1
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.3e-208 730.7 810 51.1
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.3e-208 730.7 822 50.1
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 2.9e-208 729.6 812 50.9
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 5.0e-208 728.8 809 50.2
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.9e-207 726.9 809 50.3
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 7.3e-207 724.9 809 50.7
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 9.5e-207 724.5 809 50.8
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 2.1e-206 723.4 816 49.8
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 3.6e-206 722.6 810 50.1
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.7e-206 722.2 815 49.9
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 8.0e-206 721.5 826 50.1
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 8.0e-206 721.5 807 49.9
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.4e-205 720.7 814 49.6
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 5.2e-205 718.8 814 50.5
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 5.2e-205 718.8 902 46.5
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 6.8e-205 718.4 810 50.5
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 6.8e-205 718.4 824 48.8
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 2.6e-204 716.5 809 49.3
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.3e-203 714.1 786 50.5
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 3.7e-203 712.6 816 50.0
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 4.9e-203 712.2 811 49.7
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 4.9e-203 712.2 811 49.7
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 1.4e-202 710.7 731 52.4
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.8e-202 710.3 738 51.8
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 5.4e-202 708.8 792 48.7
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 4.6e-201 705.7 738 50.9
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.3e-200 703.4 812 49.9
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 3.9e-200 702.6 818 47.8
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 2.5e-199 699.9 786 49.2
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 2.3e-197 693.3 737 51.7
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 4.4e-196 689.1 753 50.3
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.3e-192 677.6 685 53.7
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.3e-192 677.6 769 49.7
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 6.6e-192 675.2 790 50.5
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 2.3e-189 666.8 807 47.1
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 5.1e-184 649.0 729 49.2
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-183 646.7 810 45.8
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 9.5e-183 644.8 692 51.7
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 8.9e-181 638.3 820 46.1
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 7.6e-180 635.2 818 44.9
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 4.9e-179 632.5 555 60.7
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.2e-177 627.9 809 46.2
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 7.8e-177 625.2 821 44.8
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 6.6e-168 595.5 724 49.2
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.8e-166 590.1 804 44.5
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 1.4e-157 561.2 444 65.1
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 6.4e-155 552.4 961 37.6
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.5e-153 546.6 806 41.1
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 8.7e-144 515.4 716 43.9
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 6.3e-142 509.2 813 40.6
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.8e-139 500.0 629 44.8
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 7.2e-138 495.7 588 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 7.9e-137 492.3 818 39.4
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 8.5e-131 472.2 814 38.1
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 6.1e-129 466.1 572 46.2
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 1.8e-128 464.5 552 47.5
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.7e-121 440.7 596 42.8
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.0e-104 384.0 396 51.8
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 5.0e-91 340.1 479 40.9
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 8.0e-89 332.8 344 54.1
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.8e-73 281.2 525 35.2
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.9e-66 258.5 552 33.5
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 4.7e-57 227.3 701 28.7
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.3e-50 204.1 230 45.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.3e-50 204.1 230 45.7
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 5.6e-50 203.8 131 78.6
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.3e-46 192.6 437 33.2
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 8.4e-38 163.3 162 52.5
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.7e-36 158.3 148 54.1
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 8.7e-35 153.3 520 27.5
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 5.6e-34 150.6 178 41.6
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-18 99.4 173 36.4
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.5e-18 99.4 65 70.8
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 1.3e-17 96.3 101 50.5
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 3.4e-15 88.2 102 51.0
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 3.8e-14 84.7 55 70.9
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 3.8e-14 84.7 55 70.9
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 5.0e-14 84.3 55 69.1
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 8.5e-14 83.6 55 69.1
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.2e-13 81.6 161 41.0
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 9.7e-10 70.1 69 56.5
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.7e-09 69.3 51 58.8


User provided reference genes

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