Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 0.0e+00 1480.7 718 100.0
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 5.4e-309 1063.9 600 83.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 6.1e-305 1050.4 595 84.2
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 4.0e-304 1047.7 560 85.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.4e-301 1039.3 596 82.9
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 7.3e-298 1026.9 564 84.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 8.6e-291 1003.4 561 81.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.3e-290 1001.5 562 82.6
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.5e-287 992.6 587 79.0
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.7e-286 989.2 556 82.2
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 2.9e-286 988.4 559 81.2
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 1.4e-285 986.1 558 81.0
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 1.4e-285 986.1 561 79.7
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 3.2e-285 984.9 562 80.4
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.2e-284 983.0 566 79.7
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.6e-284 982.6 584 78.1
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.7e-284 981.9 554 82.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 2.7e-284 981.9 557 81.1
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 7.8e-284 980.3 564 80.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.3e-283 979.5 561 80.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 3.9e-283 978.0 566 79.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 6.6e-283 977.2 561 80.2
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.1e-282 976.5 564 79.4
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 4.3e-282 974.5 564 80.1
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 9.5e-282 973.4 564 78.7
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 1.2e-281 973.0 561 80.0
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.2e-281 973.0 566 79.7
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 4.7e-281 971.1 561 80.4
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 6.2e-281 970.7 577 78.2
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 6.2e-281 970.7 563 79.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 4.0e-280 968.0 561 79.7
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 8.9e-280 966.8 561 80.0
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.2e-279 966.5 562 79.4
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 1.5e-279 966.1 565 79.3
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 2.0e-279 965.7 552 79.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 7.6e-279 963.8 561 78.8
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.3e-278 963.0 551 79.1
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.3e-278 963.0 560 80.0
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.7e-278 962.6 566 79.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 2.2e-278 962.2 557 79.4
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 3.7e-278 961.4 584 77.6
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.9e-278 961.1 560 79.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 8.4e-278 960.3 567 78.7
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-277 959.9 563 78.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.4e-277 959.5 562 77.9
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 3.2e-277 958.4 561 78.4
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 7.1e-277 957.2 561 79.7
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.0e-275 953.4 563 78.7
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 1.3e-275 953.0 565 78.6
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.7e-275 952.6 563 77.8
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 3.0e-275 951.8 558 77.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 3.0e-275 951.8 566 78.4
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.4e-271 937.9 527 82.2
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 3.8e-270 934.9 524 81.9
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 6.4e-270 934.1 692 65.9
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 8.4e-270 933.7 565 77.3
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 8.4e-270 933.7 587 72.9
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.4e-269 932.9 562 77.6
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 3.2e-269 931.8 534 81.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 9.3e-269 930.2 582 75.1
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 7.8e-268 927.2 557 75.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.7e-267 926.0 561 77.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 3.9e-267 924.9 553 78.1
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.9e-266 922.5 558 75.6
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.9e-266 922.5 534 79.0
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.9e-266 922.5 563 77.4
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 9.6e-266 920.2 557 74.5
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.3e-265 919.8 558 75.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.3e-265 919.8 558 75.3
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.6e-265 918.3 557 74.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 4.8e-265 917.9 561 76.5
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 6.2e-265 917.5 568 73.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 6.2e-265 917.5 557 74.3
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 6.2e-265 917.5 557 74.3
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 6.2e-265 917.5 568 73.6
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 8.1e-265 917.1 560 75.5
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 5.3e-264 914.4 557 75.4
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.2e-263 913.3 546 75.8
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.6e-263 910.6 533 79.5
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 1.3e-262 909.8 557 74.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 3.8e-262 908.3 557 74.7
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 6.4e-262 907.5 633 69.0
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 8.4e-262 907.1 558 74.0
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 4.2e-261 904.8 557 74.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.3e-261 903.7 672 65.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.6e-260 902.9 776 58.1
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.1e-260 902.5 589 72.0
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 3.9e-259 898.3 559 73.2
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.9e-255 883.6 572 72.9
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.6e-252 876.3 572 72.4
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 8.1e-249 864.0 561 73.1
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.1e-248 862.1 507 78.7
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 6.9e-240 834.3 561 71.1
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.0e-239 832.8 564 71.6
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 5.5e-237 824.7 522 75.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.3e-227 792.7 500 72.6
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 2.3e-227 792.7 504 72.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 4.5e-223 778.5 564 67.6
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 7.2e-221 771.2 562 65.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.4e-216 756.1 572 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.1e-213 747.3 558 61.6
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 3.0e-211 739.2 559 61.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 4.2e-205 718.8 427 78.2
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.6e-199 700.3 549 58.7
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 7.7e-199 698.0 408 77.5
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.5e-197 693.0 551 58.4
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.3e-190 670.6 506 62.5
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.1e-189 667.5 461 69.2
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 4.4e-178 629.0 412 71.6
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.9e-176 623.6 352 82.4
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.5e-143 513.1 330 72.1
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 2.0e-122 444.1 473 50.7
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.3e-116 424.9 238 83.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.6e-90 338.2 197 78.2
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.6e-77 294.3 144 91.7
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 8.3e-76 289.3 221 66.1
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 7.8e-58 229.6 143 74.8
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 7.1e-51 206.5 340 35.9
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 2.1e-50 204.9 151 65.6
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.0e-49 201.1 160 59.4
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.9e-48 198.4 139 66.2
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 7.3e-48 196.4 155 60.0
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 4.4e-45 187.2 108 80.6
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 3.0e-41 174.5 83 91.6
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 1.2e-39 169.1 134 61.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.9e-37 159.5 103 75.7
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 5.8e-29 133.7 219 36.1
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 3.8e-28 131.0 66 86.4
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.2e-26 125.9 454 26.9
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.7e-25 119.8 82 72.0
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.5e-24 118.2 60 86.7
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.1e-22 112.8 306 28.4
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.5e-21 109.0 51 90.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.0e-18 97.1 58 75.9
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.0e-18 97.1 58 75.9
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 6.0e-18 97.1 208 26.4
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.0e-17 96.3 138 42.0
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-17 95.9 72 65.3
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-17 95.5 56 76.8
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.8e-17 95.5 52 82.7
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.7e-17 93.2 58 74.1
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.0e-14 83.2 53 73.6
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.0e-14 83.2 53 73.6
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.0e-13 82.0 51 70.6
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 1.6e-10 72.4 32 87.5
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 4.8e-07 60.8 259 24.7
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 6.3e-07 60.5 259 24.7


User provided reference genes

Program Settings