Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 6.6e-179 630.9 407 100.0
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 9.6e-162 573.9 407 91.2
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 6.9e-160 567.8 393 93.4
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.6e-156 555.1 416 76.7
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.3e-155 553.5 412 85.2
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.3e-155 553.5 406 89.4
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 2.1e-153 546.2 396 88.1
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 9.9e-151 537.3 398 87.9
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 5.5e-149 531.6 393 89.1
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 4.6e-148 528.5 407 81.3
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 4.6e-148 528.5 407 81.3
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 6.0e-148 528.1 393 79.1
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 7.9e-148 527.7 396 74.0
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 7.9e-148 527.7 407 81.3
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.3e-147 526.9 393 83.5
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.3e-147 526.9 396 87.9
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 3.0e-147 525.8 394 86.5
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 3.0e-147 525.8 394 86.5
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.7e-147 524.6 398 86.7
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 6.7e-147 524.6 393 86.8
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.5e-146 523.5 400 85.8
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.9e-146 523.1 396 85.4
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 7.4e-146 521.2 396 86.6
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.8e-145 518.5 396 85.4
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 4.8e-145 518.5 399 80.5
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.1e-144 517.3 395 85.6
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.4e-144 516.9 394 86.3
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.4e-144 516.9 393 85.2
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 2.4e-144 516.2 396 85.9
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 3.1e-144 515.8 394 75.4
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 3.1e-144 515.8 394 78.4
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 4.0e-144 515.4 394 84.0
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 6.9e-144 514.6 407 84.5
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.0e-143 513.1 399 84.0
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.0e-143 513.1 398 83.9
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 2.6e-143 512.7 397 82.1
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 5.8e-143 511.5 396 84.6
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 7.6e-143 511.1 394 85.3
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 1.0e-142 510.8 400 85.2
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 2.2e-142 509.6 388 80.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.9e-142 509.2 396 85.1
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 3.8e-142 508.8 401 83.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 4.9e-142 508.4 403 82.6
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 6.5e-142 508.1 397 84.6
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.1e-141 507.3 396 84.1
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.4e-141 506.9 394 83.5
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.4e-141 506.9 405 84.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.5e-140 502.3 394 84.5
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 4.6e-140 501.9 394 84.5
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 7.9e-140 501.1 394 83.0
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.0e-139 500.7 394 84.3
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.0e-139 500.7 397 76.8
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 3.0e-139 499.2 405 73.3
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 6.7e-139 498.0 395 83.3
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 6.7e-139 498.0 398 83.9
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 6.7e-139 498.0 394 83.5
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.9e-138 496.5 395 76.2
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 3.3e-138 495.7 396 75.0
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 4.3e-138 495.4 406 71.7
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.4e-138 494.6 416 70.2
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.4e-138 494.6 416 70.2
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.3e-137 493.8 394 82.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 8.2e-137 491.1 388 84.0
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.1e-136 490.7 406 70.2
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.0e-135 486.5 393 70.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 3.4e-135 485.7 398 82.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.7e-134 483.4 393 72.0
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 2.9e-134 482.6 409 78.5
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.5e-133 479.6 398 73.4
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 7.2e-133 478.0 398 73.1
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 7.2e-133 478.0 397 69.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 7.2e-133 478.0 396 70.7
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.2e-132 477.2 524 65.1
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.6e-132 476.9 397 73.3
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.6e-132 476.9 398 72.9
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 7.9e-132 474.6 393 68.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 2.3e-131 473.0 386 75.9
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 5.1e-131 471.9 398 81.2
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.1e-130 470.7 398 72.4
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 7.4e-130 468.0 386 79.5
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 4.8e-129 465.3 407 79.1
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 6.3e-129 464.9 387 78.8
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.1e-128 464.2 395 77.5
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.8e-128 463.4 387 78.6
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.8e-128 463.4 387 78.6
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.8e-128 463.4 387 78.6
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.8e-128 463.4 365 83.0
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 1.5e-127 460.3 393 80.9
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 5.9e-127 458.4 384 78.4
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 3.8e-126 455.7 387 77.8
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 3.8e-126 455.7 387 77.8
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.8e-126 455.7 514 62.3
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 8.5e-126 454.5 385 77.7
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.9e-125 453.4 393 75.8
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.9e-125 453.4 397 70.5
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 4.2e-125 452.2 385 77.4
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.2e-125 452.2 395 77.0
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 5.5e-125 451.8 385 77.9
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 2.7e-124 449.5 385 76.9
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.0e-123 447.6 423 64.5
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.5e-122 443.7 428 65.7
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.8e-121 439.5 314 97.5
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.8e-120 436.8 396 77.0
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.0e-119 433.3 396 77.0
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 3.5e-119 432.6 396 76.8
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.3e-118 430.6 387 69.3
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.0e-115 421.0 386 73.3
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.8e-115 420.2 396 65.7
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 8.2e-113 411.4 401 57.4
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.6e-111 407.1 402 58.5
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 4.5e-111 405.6 422 60.9
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.0e-110 404.4 399 60.2
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.0e-110 404.4 399 60.2
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 5.0e-110 402.1 414 58.5
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.0e-107 394.4 394 58.6
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 6.8e-107 391.7 388 67.5
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.2e-106 391.0 389 67.1
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 2.6e-106 389.8 388 67.0
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 2.2e-105 386.7 392 57.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 4.8e-105 385.6 416 56.0
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.8e-104 383.6 382 59.9
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.6e-103 380.6 401 55.4
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 2.7e-103 379.8 439 49.2
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-102 377.5 428 54.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 6.5e-102 375.2 394 56.9
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.2e-95 354.4 307 77.9
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 3.5e-95 352.8 414 51.9
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 3.5e-95 352.8 404 53.0
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.1e-92 343.6 386 53.4
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.4e-88 328.9 332 63.3
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.3e-86 323.6 366 55.7
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 1.5e-85 320.9 317 67.2
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 7.5e-82 308.5 394 46.4
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 5.6e-77 292.4 387 43.9
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.4e-75 287.7 253 67.2
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.5e-74 284.3 293 77.5
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 6.4e-73 278.9 407 48.4
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.2e-71 274.6 205 64.9
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.1e-68 263.8 397 43.3
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 3.2e-64 250.0 398 46.7
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 4.1e-64 249.6 256 59.8
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.1e-63 247.3 256 59.8
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 6.4e-57 225.7 186 61.3
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 9.9e-50 201.8 125 77.6
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 4.6e-47 193.0 290 40.7
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.9e-46 189.9 94 92.6
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 2.5e-45 187.2 290 40.3
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.9e-43 179.1 94 87.2
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 7.6e-42 175.6 387 37.2
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.9e-41 173.7 125 69.6
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 3.9e-38 163.3 80 92.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.0e-33 148.7 157 52.2
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.1e-32 145.2 185 47.6
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-30 138.3 95 71.6
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.3e-30 137.5 91 72.5
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 5.1e-30 136.3 94 64.9
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 4.5e-26 123.2 83 71.1
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.3e-22 111.7 291 37.5
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.8e-22 111.3 69 72.5
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.9e-21 107.8 83 61.4
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.5e-21 107.5 73 69.9
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.2e-20 104.4 50 86.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 6.3e-20 102.8 78 60.3
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 1.4e-19 101.7 120 65.8
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 2.5e-16 90.9 72 56.9
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 7.2e-16 89.4 164 32.9
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.5e-13 80.9 40 92.5
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.5e-13 80.9 40 92.5
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.3e-12 78.6 55 65.5
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.4e-11 75.1 36 91.7
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 2.4e-11 74.3 47 63.8
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 5.3e-11 73.2 37 83.8
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 9.1e-11 72.4 35 91.4
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.4e-10 70.5 37 78.4
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.0e-09 68.9 35 85.7
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 5.0e-09 66.6 81 43.2
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 5.5e-08 63.2 59 55.9
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 7.2e-08 62.8 37 73.0
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.6e-07 61.6 37 73.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 7.9e-07 59.3 31 77.4
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 8.8e-06 55.8 44 54.5
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 8.8e-06 55.8 67 43.3


User provided reference genes

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