Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.1e-112 409.1 208 100.0
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 8.5e-106 387.1 206 94.7
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.4e-105 386.3 206 93.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 94.2
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.6e-104 381.7 206 93.7
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 93.7
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 93.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 93.2
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 7.9e-104 380.6 206 91.7
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 93.2
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 93.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 92.7
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.0e-103 378.6 206 91.7
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.0e-103 378.6 205 91.7
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.0e-103 378.6 212 91.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.0e-103 378.6 206 91.3
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 92.2
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 92.2
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 91.7
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 91.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 92.2
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.3
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 91.7
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 91.7
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 91.7
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 91.7
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.3e-102 375.2 206 91.7
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.3e-102 375.2 206 90.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 90.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 90.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 91.7
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 90.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 5.7e-102 374.4 205 90.7
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 90.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 90.9
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 91.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 90.3
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 91.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 91.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 90.3
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 91.7
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 9.7e-102 373.6 206 92.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.3e-101 373.2 206 90.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 89.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 90.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.2e-101 372.5 206 89.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.2e-101 372.5 206 91.3
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.7e-101 371.7 206 90.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.7e-101 371.7 206 90.8
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 4.8e-101 371.3 205 89.8
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 89.8
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.4e-100 369.8 206 90.8
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 209 90.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 89.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.8e-100 369.4 211 89.6
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 88.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 90.3
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 209 90.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.4e-100 369.0 209 90.0
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 90.3
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 90.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 3.1e-100 368.6 206 90.3
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 209 90.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.1e-100 368.2 206 88.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 4.1e-100 368.2 206 89.3
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.3e-100 367.9 206 88.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.9e-100 367.5 206 89.8
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 9.1e-100 367.1 206 89.3
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 206 89.3
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.5e-99 366.3 206 89.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.0e-99 365.9 203 90.6
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.0e-99 365.9 206 89.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 89.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 89.4
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 3.4e-99 365.2 206 87.4
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 206 89.3
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 88.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 88.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.3e-98 363.2 206 88.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 2.9e-98 362.1 206 91.3
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 3.8e-98 361.7 216 85.2
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.4e-97 359.8 207 88.4
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.9e-97 359.4 207 88.4
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 4.2e-97 358.2 206 85.4
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 7.2e-97 357.5 207 87.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.2e-96 356.7 205 87.3
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.1e-96 355.9 207 87.0
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.7e-96 355.5 206 87.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 6.1e-96 354.4 206 85.4
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 6.1e-96 354.4 205 86.8
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-95 352.8 205 87.3
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-95 352.8 205 87.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.8e-95 352.8 206 84.5
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.3e-95 352.4 206 84.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.0e-95 352.1 205 87.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 6.7e-95 350.9 206 87.9
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-94 350.1 196 90.8
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 3.3e-94 348.6 206 86.4
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.8e-93 345.5 205 85.4
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.4e-92 342.4 207 85.0
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 9.4e-89 330.5 176 92.6
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.6e-88 328.6 206 83.0
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 8.0e-88 327.4 177 91.0
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.0e-87 325.5 206 82.0
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.1e-86 323.6 177 90.4
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.1e-86 323.6 190 85.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.7e-86 320.5 206 75.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 3.7e-85 318.5 176 89.2
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 8.2e-85 317.4 177 89.3
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.0e-83 312.8 203 80.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.6e-83 312.4 177 84.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.9e-82 308.9 206 79.1
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.8e-79 299.7 205 76.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 5.3e-76 288.1 167 85.0
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.7e-75 285.8 156 91.0
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.7e-74 283.1 154 89.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 6.5e-74 281.2 207 72.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.7e-70 268.1 213 70.9
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 3.1e-68 262.3 202 63.9
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.0e-68 261.2 208 68.8
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.7e-66 256.5 203 61.1
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 7.2e-65 251.1 200 60.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 8.9e-63 244.2 198 60.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 2.6e-62 242.7 160 79.4
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 6.6e-58 228.0 196 55.6
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 7.3e-57 224.6 133 88.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.7e-56 221.9 118 91.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-52 210.3 207 51.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.4e-52 209.5 207 54.1
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.0e-51 206.5 164 65.9
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 4.6e-51 205.3 197 49.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.6e-49 198.4 149 70.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.0e-47 192.2 207 56.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 7.5e-46 188.0 196 45.4
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.7e-42 176.8 156 63.5
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 5.6e-41 171.8 230 41.7
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-38 164.1 98 81.6
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.7e-37 160.2 206 48.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.0e-34 149.4 206 47.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.2e-30 137.5 187 38.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.5e-30 137.1 94 77.7
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 9.9e-30 134.4 99 71.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.9e-29 132.1 74 89.2
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.0e-26 124.4 83 75.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.3e-26 123.2 92 69.6
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 5.1e-26 122.1 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-23 114.0 58 87.9
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.5e-22 110.5 60 90.0
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-21 106.7 73 76.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.8e-21 105.9 82 65.9
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 8.4e-13 78.2 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 4.6e-11 72.4 62 67.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 4.8e-08 62.4 39 69.2
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.4e-07 60.1 137 25.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.1e-07 59.7 38 71.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 5.3e-07 58.9 47 70.2


User provided reference genes

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