Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 7.0e-122 440.7 227 100.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 8.9e-109 397.1 226 88.5
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.0e-108 396.0 227 87.2
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 88.5
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 7.6e-108 394.0 227 85.0
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 86.3
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 85.5
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 83.7
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 85.0
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 84.6
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 84.6
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 85.0
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 85.0
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 83.7
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 84.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 86.8
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 84.6
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 84.6
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 83.3
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 84.6
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 4.6e-105 384.8 226 83.6
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.7e-104 382.9 227 82.8
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.7e-104 382.9 228 84.6
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 81.9
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.0e-104 382.1 219 87.2
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 81.9
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 83.7
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.1e-103 380.2 228 82.0
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 82.4
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 82.4
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 82.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 82.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 82.9
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 82.5
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 82.8
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.6e-103 377.9 228 86.4
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 83.3
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 83.3
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.2e-102 376.7 219 85.8
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 82.8
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 81.5
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 83.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 83.3
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 81.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 80.6
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 81.1
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.5
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 6.2e-102 374.4 219 85.8
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 80.6
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-101 373.2 225 84.4
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 81.1
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 82.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.1e-101 372.1 214 85.0
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.2e-101 371.3 215 84.7
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 81.9
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 81.1
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 8.9e-101 370.5 216 84.3
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-100 370.2 216 83.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.9
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 80.2
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.0e-100 369.4 216 84.3
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 81.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 78.9
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 79.7
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 81.1
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 80.2
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 80.6
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 79.7
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.2
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.6
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.7e-99 366.3 216 83.3
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 81.6
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.2e-99 365.9 219 82.2
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 79.7
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.2e-99 365.9 214 83.6
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 80.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.9e-99 365.5 215 85.1
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 3.8e-99 365.2 229 81.2
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.8e-99 365.2 217 82.9
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 78.9
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.4e-98 362.5 218 83.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.4e-98 362.5 229 79.0
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 3.2e-98 362.1 227 78.9
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 78.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 7.1e-98 360.9 224 79.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 7.1e-98 360.9 227 80.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 9.3e-98 360.5 229 79.0
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 9.3e-98 360.5 214 81.8
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 78.4
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.7e-97 359.0 228 78.9
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.7e-97 359.0 227 78.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.5e-97 358.6 225 78.2
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 80.8
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.3e-96 356.7 207 84.1
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.1e-96 354.8 214 84.1
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 8.7e-96 354.0 206 84.5
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 8.7e-96 354.0 214 80.8
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.1e-95 353.6 214 82.7
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 4.3e-95 351.7 215 80.0
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 5.6e-95 351.3 233 76.0
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.6e-95 350.5 214 79.9
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.1e-93 347.1 205 82.9
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.8e-93 346.3 225 77.3
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.8e-93 346.3 206 82.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.4e-93 345.9 265 67.9
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 3.1e-93 345.5 214 79.9
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.2e-92 343.6 227 78.0
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.5e-92 343.2 213 79.8
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 9.9e-92 340.5 237 74.7
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.9e-90 336.3 214 77.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 5.6e-87 324.7 202 81.2
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.6e-86 323.2 214 74.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 8.1e-86 320.9 190 81.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 6.9e-85 317.8 191 79.6
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-84 316.2 195 78.5
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 5.8e-84 314.7 220 71.4
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 9.9e-84 313.9 227 70.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.4e-82 308.1 195 78.5
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 8.1e-78 294.3 226 66.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.3e-75 287.0 150 97.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 3.8e-75 285.4 226 67.3
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.9e-74 283.1 181 79.0
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.9e-74 283.1 214 67.8
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 7.9e-73 277.7 164 82.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 8.7e-72 274.2 229 65.9
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.5e-71 272.7 164 81.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 8.2e-70 267.7 227 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.4e-69 266.2 209 66.5
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.4e-69 266.2 193 71.0
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.5e-68 263.5 160 80.0
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.7e-65 252.7 153 78.4
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 8.7e-64 247.7 197 67.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.2e-62 243.0 247 53.8
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 2.0e-60 236.5 155 75.5
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 5.1e-56 221.9 215 54.4
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.4e-52 209.1 201 58.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.9e-51 206.1 131 71.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.8e-40 170.2 99 80.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.5e-39 164.9 115 70.4
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 2.8e-38 162.9 108 72.2
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-30 137.5 109 67.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.8e-30 136.3 92 69.6
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-28 131.0 87 71.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.2e-26 121.7 113 60.2
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.2e-23 114.4 135 46.7
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.9e-18 97.1 63 69.8
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.3e-18 95.9 61 78.7
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.4e-14 82.0 70 65.7
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.4e-14 82.0 97 47.4
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.2e-12 77.8 68 55.9
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-12 77.0 114 41.2
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.3e-11 73.6 208 28.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.3e-08 63.5 63 57.1


User provided reference genes

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