Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 7.8e-204 714.1 539 100.0
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.3e-110 404.4 556 65.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 6.8e-107 392.1 542 67.9
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 6.2e-100 369.0 516 62.6
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.7e-94 350.9 522 63.4
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 2.5e-93 347.1 492 58.3
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 7.1e-88 328.9 510 71.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 6.6e-86 322.4 537 64.1
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-85 321.6 514 70.6
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.5e-85 321.2 541 65.6
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.3e-85 320.1 527 62.4
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 4.3e-85 319.7 511 61.8
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.3e-84 318.2 476 65.1
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.6e-84 317.8 502 66.3
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.1e-84 317.4 537 63.7
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.1e-83 315.1 525 68.0
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.6e-82 310.5 423 70.2
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.6e-82 310.5 419 77.8
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.2e-81 307.4 583 57.3
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.9e-81 306.2 499 61.9
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.4e-80 304.7 514 66.9
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.4e-80 303.9 513 63.2
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 4.2e-80 303.1 510 60.6
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 4.2e-80 303.1 418 67.0
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 9.3e-80 302.0 498 67.5
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.1e-79 300.8 519 65.3
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.1e-79 300.8 500 66.6
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.7e-79 300.4 493 69.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 3.5e-79 300.1 495 66.5
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 6.0e-79 299.3 537 64.2
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.0e-78 298.5 498 63.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.0e-78 298.5 495 65.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.7e-78 297.7 487 63.0
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.3e-78 297.4 510 67.3
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.0e-78 297.0 532 57.9
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 5.1e-78 296.2 498 62.9
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 8.7e-78 295.4 510 63.5
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.5e-77 294.7 514 68.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.5e-77 293.9 516 64.3
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.3e-76 291.6 442 67.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.6e-76 291.2 500 68.8
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.6e-76 290.0 543 62.1
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.4e-75 287.3 419 74.7
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.3e-75 286.2 535 57.4
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.3e-75 286.2 556 57.9
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.5e-74 284.6 524 63.7
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.5e-74 284.6 511 69.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.0e-74 284.3 503 67.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.0e-74 284.3 520 64.4
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.6e-74 283.9 566 62.5
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 9.9e-74 282.0 531 64.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.7e-73 281.2 543 64.8
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.9e-73 280.4 521 65.5
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 6.4e-73 279.3 422 70.1
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 6.4e-73 279.3 516 63.8
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-72 278.1 525 65.7
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.9e-72 277.7 548 62.4
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 3.2e-72 276.9 523 64.4
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 5.4e-72 276.2 538 60.2
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.3e-72 275.4 188 76.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.2e-71 275.0 173 80.3
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.6e-71 274.6 541 64.3
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.6e-71 274.6 525 64.6
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.7e-71 273.9 535 58.5
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.7e-71 273.9 416 74.0
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 3.5e-71 273.5 460 67.6
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 3.5e-71 273.5 551 53.7
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.8e-70 271.2 600 56.7
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.3e-70 270.8 555 62.2
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 2.3e-70 270.8 522 57.7
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 3.0e-70 270.4 419 74.7
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 3.0e-70 270.4 532 43.4
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.9e-70 270.0 422 73.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 3.9e-70 270.0 537 62.2
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 6.7e-70 269.2 191 74.9
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 6.7e-70 269.2 535 65.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 8.7e-70 268.9 566 51.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.9e-69 267.7 458 53.5
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.5e-69 267.3 414 75.1
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.5e-69 267.3 598 54.5
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.3e-69 266.9 186 75.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 7.4e-69 265.8 414 74.6
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 7.4e-69 265.8 598 56.5
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.6e-68 264.6 184 76.6
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.1e-68 264.2 515 60.4
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.8e-68 263.1 187 73.8
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 4.8e-68 263.1 409 75.3
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 6.2e-68 262.7 406 69.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 6.2e-68 262.7 409 75.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 8.1e-68 262.3 190 73.2
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.4e-67 260.8 185 75.1
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.4e-67 260.8 182 74.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.1e-67 260.4 183 76.5
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.2e-66 258.5 163 81.0
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 4.5e-66 256.5 154 83.8
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.7e-65 254.6 506 66.8
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.7e-65 254.6 173 78.6
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 3.8e-65 253.4 539 57.5
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.9e-65 253.1 187 71.7
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.9e-65 253.1 187 71.7
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.1e-64 251.9 172 75.0
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.4e-64 251.5 160 78.8
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.9e-64 251.1 160 80.0
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 4.2e-64 250.0 160 78.8
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.5e-64 249.6 510 64.5
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.7e-63 247.3 407 75.7
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 6.0e-63 246.1 155 80.0
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 7.9e-63 245.7 559 51.9
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 7.9e-63 245.7 551 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.0e-62 245.4 145 84.1
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 3.0e-62 243.8 523 61.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 6.7e-62 242.7 192 69.8
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 4.3e-61 240.0 527 49.1
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 4.3e-61 240.0 550 48.7
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.3e-60 238.4 157 76.4
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-60 236.9 405 63.5
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 6.2e-60 236.1 405 63.5
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.4e-59 235.0 404 62.4
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-59 234.6 412 60.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 5.3e-59 233.0 147 81.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 9.0e-59 232.3 405 62.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-57 228.4 409 61.4
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-57 228.0 153 76.5
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-57 228.0 154 76.6
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.7e-57 228.0 496 50.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 6.5e-57 226.1 152 76.3
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 8.4e-57 225.7 124 88.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-56 225.3 124 88.7
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-56 223.4 405 58.8
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-55 220.7 161 73.9
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 6.1e-55 219.5 149 79.2
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 7.9e-55 219.2 185 65.9
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-54 218.8 121 88.4
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.8e-54 218.0 184 66.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 6.7e-54 216.1 124 85.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 6.7e-54 216.1 121 87.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 8.7e-54 215.7 131 83.2
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-53 215.3 405 56.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-53 214.5 171 70.8
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-52 211.1 163 71.8
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-52 211.1 163 71.8
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-51 206.8 413 36.8
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 6.9e-51 206.1 164 68.9
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.2e-47 195.3 181 61.3
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 2.5e-45 187.6 134 74.6
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-43 182.2 114 81.6
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.4e-43 181.0 402 58.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.1e-43 180.3 100 89.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 5.0e-41 173.3 139 71.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 8.5e-41 172.6 107 81.3
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 7.2e-40 169.5 124 73.4
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 7.4e-37 159.5 160 58.8
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-36 157.9 95 81.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.0e-34 151.4 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.9e-32 144.8 126 61.1
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.6e-29 134.4 180 49.4
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 4.4e-29 133.7 76 85.5
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.3e-28 132.1 103 58.3
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.8e-28 131.0 76 84.2
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 5.3e-27 126.7 75 86.7
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-24 118.2 76 76.3
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.5e-24 117.9 434 59.9
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 5.5e-24 116.7 76 75.0
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.7e-23 113.6 506 44.1
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 8.0e-23 112.8 162 53.1
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 8.0e-23 112.8 63 90.5
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-20 104.0 60 85.0
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-20 104.0 60 85.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 5.9e-18 96.7 81 65.4
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 3.8e-17 94.0 60 80.0
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.4e-16 89.4 52 82.7
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 8.8e-14 82.8 52 82.7
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-11 75.1 66 60.6
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-10 70.5 49 71.4
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 7.7e-10 69.7 55 61.8
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.8e-09 67.4 175 35.4
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 8.6e-09 66.2 66 60.6


User provided reference genes

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