Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 0.0e+00 1547.3 816 100.0
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 0.0e+00 1142.9 920 68.5
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 0.0e+00 1090.9 920 64.9
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 0.0e+00 1084.3 920 66.7
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.1e-294 1016.5 929 62.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.1e-260 902.1 912 57.0
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.2e-259 900.2 924 56.1
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 9.9e-259 897.1 860 58.1
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.9e-257 892.9 929 56.1
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 5.1e-255 884.8 932 55.7
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 2.1e-253 879.4 863 57.4
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 5.8e-251 871.3 904 55.5
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.7e-248 862.4 892 54.8
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 3.0e-247 859.0 863 56.2
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 8.7e-247 857.4 881 55.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.6e-245 853.2 931 53.6
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 2.8e-245 852.4 914 54.2
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 5.8e-243 844.7 934 53.9
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.7e-242 843.2 881 54.7
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 2.2e-242 842.8 863 54.8
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 3.8e-242 842.0 864 55.8
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 5.4e-241 838.2 918 52.8
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 6.0e-240 834.7 867 54.9
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.3e-239 833.6 920 52.7
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.8e-239 833.2 919 53.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 2.5e-238 829.3 924 52.9
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.3e-238 828.9 912 52.2
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 1.3e-237 827.0 967 51.4
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.3e-237 827.0 865 53.5
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.6e-237 826.6 909 52.4
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 3.6e-237 825.5 912 52.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 3.6e-237 825.5 929 52.4
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 4.0e-236 822.0 882 52.9
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 5.3e-236 821.6 876 53.2
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 9.0e-236 820.8 870 52.6
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 4.5e-235 818.5 865 52.8
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 5.8e-235 818.1 926 51.5
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 9.9e-235 817.4 869 53.4
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 2.9e-234 815.8 862 54.1
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.9e-234 815.1 871 53.2
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.1e-233 813.9 914 51.8
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.9e-233 813.1 858 53.7
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 7.1e-233 811.2 901 53.2
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 2.1e-232 809.7 841 54.7
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 4.6e-232 808.5 913 51.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.8e-231 806.6 915 50.7
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 1.8e-231 806.6 867 52.7
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 3.0e-231 805.8 925 52.8
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 5.1e-231 805.1 914 51.8
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.5e-230 802.7 929 51.7
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.8e-229 799.3 930 51.7
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 2.8e-229 799.3 913 51.4
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 3.7e-229 798.9 860 52.7
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 8.1e-229 797.7 887 51.9
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.8e-228 796.6 902 51.7
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 6.9e-228 794.7 918 51.7
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 9.0e-228 794.3 925 50.1
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 9.0e-228 794.3 909 50.9
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 2.6e-227 792.7 917 51.9
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 8.4e-226 787.7 917 51.8
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 5.5e-225 785.0 986 47.5
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.8e-223 780.0 909 49.6
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.5e-222 776.9 927 50.4
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.9e-222 776.5 919 50.6
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 7.4e-222 774.6 933 49.1
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 9.6e-222 774.2 866 52.0
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 4.5e-219 765.4 919 49.8
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.9e-217 760.0 929 49.4
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 4.6e-216 755.4 888 50.6
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.3e-215 753.1 924 49.4
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.5e-214 750.4 918 49.1
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.9e-214 750.0 888 50.0
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.9e-214 750.0 874 50.3
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 4.3e-214 748.8 883 50.1
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 7.4e-214 748.0 888 50.3
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 7.4e-214 748.0 888 50.3
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 1.1e-212 744.2 925 48.1
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.1e-212 744.2 926 49.0
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 7.7e-211 738.0 812 53.7
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 6.5e-210 734.9 847 50.3
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.6e-208 728.8 922 47.4
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 6.1e-208 728.4 847 50.1
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 2.3e-207 726.5 873 49.5
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 5.0e-202 708.8 925 45.9
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 4.2e-201 705.7 839 49.7
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 7.9e-200 701.4 603 63.5
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.0e-199 701.0 885 46.6
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.7e-197 693.7 601 62.7
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 1.2e-195 687.6 856 47.8
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.0e-190 670.2 665 57.0
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.7e-190 668.7 867 46.4
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 8.2e-189 664.8 633 59.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 5.3e-188 662.1 754 51.1
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 4.7e-176 622.5 802 45.4
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.0e-175 621.3 643 55.5
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.5e-153 547.0 910 38.4
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 1.4e-148 531.2 898 38.2
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.4e-148 530.4 889 37.2
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.6e-147 527.7 648 48.8
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 3.3e-145 520.0 873 39.2
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.3e-141 508.1 547 52.1
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 3.8e-141 506.5 552 52.5
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 3.2e-140 503.4 610 46.6
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.8e-135 487.6 721 44.7
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 5.2e-135 486.1 851 37.7
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.3e-117 428.3 474 51.7
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 2.7e-107 394.0 865 35.4
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 6.7e-106 389.4 475 49.1
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.8e-104 384.0 374 56.7
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 2.6e-102 377.5 457 52.5
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 7.6e-102 375.9 421 54.4
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 1.2e-91 342.0 628 35.7
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.0e-87 326.2 433 47.3
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.6e-83 315.1 757 32.1
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 6.5e-77 293.1 579 35.1
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.2e-70 272.3 314 51.3
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-62 245.4 270 50.4
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.8e-61 240.7 256 53.1
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.2e-60 237.3 346 42.5
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.4e-57 227.3 180 63.9
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-53 214.9 392 41.3
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 3.4e-49 201.1 189 57.7
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 4.4e-49 200.7 181 59.1
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-44 186.0 163 62.0
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.1e-44 186.0 384 34.4
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 2.3e-42 178.3 160 58.1
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 5.4e-39 167.2 163 54.6
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 3.9e-37 161.0 131 63.4
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.8e-34 150.2 177 45.8
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 5.8e-33 147.1 105 73.3
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 4.9e-32 144.1 131 58.0
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.2e-31 141.4 179 45.8
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 9.2e-31 139.8 109 70.6
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 2.5e-28 131.7 96 68.8
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 5.3e-18 97.4 108 53.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.5e-17 95.9 74 68.9
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.4e-17 94.7 143 45.5
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 5.8e-17 94.0 74 71.6
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.7e-16 92.4 62 80.6
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 2.9e-16 91.7 91 56.0
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 5.4e-15 87.4 135 44.4
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-13 82.8 58 69.0
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.0e-10 70.1 104 42.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 7.6e-09 67.0 63 55.6
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 2.4e-07 62.0 67 55.2


User provided reference genes

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