Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.4e-224 782.7 411 100.0
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 4.4e-122 442.2 437 59.7
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.4e-115 420.6 431 57.5
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 4.4e-98 362.5 430 50.7
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.2e-95 354.4 428 50.5
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.0e-78 298.1 439 42.4
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.5e-77 294.3 435 44.6
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 3.1e-75 286.6 437 42.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.1e-75 286.6 437 42.6
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.1e-75 286.6 437 42.1
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 5.8e-74 282.3 434 41.0
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 5.8e-74 282.3 441 42.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 7.6e-74 282.0 425 42.6
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 7.6e-74 282.0 434 40.6
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 9.9e-74 281.6 424 43.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.9e-73 280.0 449 41.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.9e-73 280.0 434 40.3
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.1e-72 278.1 437 41.2
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.2e-71 274.6 440 40.9
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.6e-71 274.2 442 39.8
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.6e-71 274.2 436 41.5
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.0e-70 271.6 439 41.2
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.3e-70 271.2 441 41.0
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.7e-70 270.8 441 39.7
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.0e-70 270.0 440 41.1
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.5e-69 267.7 439 41.5
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.3e-69 265.4 435 40.0
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 9.6e-69 265.0 431 40.4
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.3e-68 264.6 425 42.1
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.8e-68 263.5 435 39.8
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.1e-67 261.5 435 39.8
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.4e-67 260.4 422 41.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-66 257.7 425 41.4
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.6e-66 256.9 439 39.0
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 3.4e-66 256.5 425 41.4
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.4e-66 256.5 422 41.0
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.4e-66 256.1 422 40.5
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.8e-66 255.8 422 41.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 5.8e-66 255.8 441 38.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.9e-66 255.0 422 40.3
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.8e-65 253.1 422 40.8
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 8.4e-65 251.9 440 40.9
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.9e-64 250.8 442 38.9
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 4.2e-64 249.6 431 37.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 9.3e-64 248.4 399 41.1
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.6e-63 246.1 431 39.4
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 4.6e-63 246.1 425 39.8
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 6.0e-63 245.7 437 39.1
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 6.0e-63 245.7 438 39.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.0e-62 245.0 443 40.6
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.1e-61 241.5 433 36.5
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 9.6e-61 238.4 427 38.2
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 9.6e-61 238.4 438 39.5
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.6e-60 237.7 424 38.0
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.6e-60 237.7 441 36.1
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.9e-59 232.3 413 36.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-58 231.5 438 37.2
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.4e-58 229.9 433 39.0
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 5.8e-58 229.2 437 38.2
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 7.6e-58 228.8 425 38.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 9.9e-58 228.4 433 36.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-57 228.0 422 38.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.9e-57 226.9 436 38.1
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 3.8e-57 226.5 441 37.2
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 3.8e-57 226.5 419 37.9
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.4e-57 225.3 419 37.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-56 224.9 436 36.9
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.1e-56 224.9 439 38.0
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.4e-56 224.6 195 62.6
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-56 224.2 354 41.0
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.4e-56 223.8 422 38.4
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.6e-55 221.1 427 37.7
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 7.9e-55 218.8 426 38.5
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.8e-54 217.6 363 41.3
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.8e-54 217.6 350 41.7
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.8e-54 217.6 436 37.4
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.9e-54 216.5 460 35.2
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-53 214.9 430 36.7
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.5e-53 214.5 426 36.4
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.3e-53 213.0 314 42.0
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 9.6e-53 211.8 421 39.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.6e-52 211.1 428 36.2
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 6.2e-52 209.1 427 34.7
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 8.1e-52 208.8 408 36.5
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.1e-51 208.4 429 35.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.4e-51 208.0 422 38.9
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.8e-51 207.6 426 35.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 9.0e-51 205.3 426 39.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.2e-50 204.9 420 36.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.5e-50 204.5 427 34.4
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-50 203.8 427 34.4
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.4e-50 203.4 427 35.1
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 4.5e-50 203.0 426 34.5
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 7.6e-50 202.2 427 34.2
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.0e-49 201.8 336 41.1
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-49 201.1 427 35.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-49 201.1 427 35.6
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 3.8e-49 199.9 422 34.4
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 3.8e-49 199.9 436 35.6
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.7e-47 193.7 425 35.5
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 3.5e-47 193.4 442 33.7
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 6.0e-47 192.6 427 34.2
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.3e-46 191.4 433 36.7
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.3e-46 191.4 414 37.2
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 6.7e-46 189.1 450 33.3
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.5e-45 188.0 431 34.6
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.3e-45 186.8 398 36.7
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.3e-45 186.8 453 34.4
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 5.7e-45 186.0 351 38.7
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.8e-44 183.7 426 31.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.1e-43 181.8 427 33.3
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.9e-43 179.1 239 42.3
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 9.0e-43 178.7 441 34.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 2.0e-42 177.6 179 52.5
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.6e-42 177.2 346 35.5
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.1e-40 171.8 431 33.6
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.6e-39 167.9 231 42.0
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.6e-39 166.4 381 34.1
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.6e-39 166.4 231 42.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.3e-38 164.1 428 29.9
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.5e-37 161.4 379 33.2
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.9e-37 161.0 400 31.8
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 5.7e-37 159.5 363 32.0
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.4e-35 154.8 374 34.0
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.1e-35 153.7 238 41.6
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.0e-33 148.7 409 30.6
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 8.5e-33 145.6 387 31.0
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.5e-29 134.0 388 30.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-27 128.3 170 41.8
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 2.0e-26 124.4 347 30.8
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 2.2e-25 120.9 253 35.2
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 8.5e-25 119.0 179 41.9
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.0e-22 112.1 199 38.2
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.0e-22 112.1 158 41.8
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.0e-22 112.1 158 41.8
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 3.0e-22 110.5 158 41.1
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 3.0e-22 110.5 158 41.1
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 5.1e-22 109.8 149 43.0
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.1e-22 109.8 169 42.0
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.1e-16 92.0 299 30.1
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.6e-15 88.2 86 53.5
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.0e-14 85.5 128 41.4
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.4e-14 85.1 264 31.8
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.1e-11 75.5 390 22.8
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-08 64.7 60 48.3
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.2e-07 62.0 71 42.3
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.6e-07 61.6 80 38.8
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-06 58.5 132 34.1
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.3e-06 57.8 60 50.0
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 8.8e-06 55.8 78 37.2
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 8.8e-06 55.8 78 37.2


User provided reference genes

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