Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 2233.0 1155 100.0
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1705.3 1151 77.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1667.9 1178 74.4
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1661.0 1160 75.1
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1535.4 1204 68.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1424.8 1177 65.3
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1421.4 1175 63.7
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1419.4 1137 64.5
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1416.0 1157 65.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1413.7 1125 66.8
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1411.0 1165 64.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1152 63.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1382.1 1176 62.8
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1381.7 1169 63.5
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1373.2 1151 62.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1167 62.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1371.3 1140 63.6
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1370.9 1223 60.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1368.6 1173 61.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1360.9 1011 68.5
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1359.7 1179 60.8
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1357.0 1175 62.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1356.3 1143 63.2
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1355.5 1134 61.6
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1351.7 1148 61.2
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1350.5 1150 61.7
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1350.5 1138 63.4
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1350.1 1134 62.7
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1343.9 1151 61.3
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1343.6 1150 60.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1342.4 1135 62.6
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1338.6 1146 61.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1337.4 1134 61.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1331.2 1146 60.9
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1330.5 1281 57.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1329.3 1161 61.7
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1327.8 1165 60.6
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1323.5 1165 60.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1321.6 1158 59.7
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1318.9 1163 60.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1317.4 1164 60.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1316.2 1106 62.5
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1305.8 1137 60.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1305.4 1063 63.1
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1303.9 1151 59.8
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1302.7 1166 59.9
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1302.7 1163 61.1
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1298.1 1133 60.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1297.3 1134 60.6
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1292.7 1136 60.4
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1291.6 1138 60.2
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1290.8 1152 59.2
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1138 60.4
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 1064 62.9
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1282.3 1132 59.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1279.2 1157 58.9
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1278.8 1131 59.5
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1278.1 1167 58.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1277.7 1138 59.8
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1273.1 1136 59.9
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1271.9 1063 61.7
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1270.0 1155 60.4
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1141 59.3
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1263.4 1146 58.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1260.4 1034 63.2
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1027 62.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1258.8 1164 59.4
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1256.9 1384 51.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1255.0 1160 58.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1251.5 1168 57.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1249.2 1149 58.4
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1247.6 1039 61.3
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1246.9 972 64.2
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1245.0 1034 61.2
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1243.0 1174 56.6
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1242.6 1027 61.4
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1039 61.1
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1241.1 1028 61.3
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1239.6 1096 59.7
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1238.4 1094 59.0
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1232.6 1081 59.3
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1232.2 1131 57.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1228.0 1030 60.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1224.5 1164 58.2
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1223.0 1032 60.4
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1220.7 1085 59.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1218.4 1145 57.7
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1217.6 1030 60.0
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1217.6 1044 59.8
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1214.9 1042 59.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1213.0 1114 58.2
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1203.0 1155 57.6
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1167.1 1054 55.7
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1155.2 1103 56.6
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1136.3 1069 54.8
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1134.8 926 62.2
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1130.5 1044 54.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1114.0 1043 55.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1112.8 1000 58.6
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1100.5 1087 55.5
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1095.5 1029 54.2
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1094.3 1042 55.7
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 2.0e-305 1052.7 875 63.1
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 7.6e-305 1050.8 1041 53.6
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 3.2e-295 1018.8 845 62.7
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.1e-287 993.8 958 53.8
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 3.0e-285 985.7 1040 52.8
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-283 979.5 681 72.1
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 7.9e-278 961.1 1006 49.6
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.4e-266 922.9 787 60.4
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 5.3e-266 921.8 1004 47.1
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.2e-254 884.0 972 46.8
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.0e-237 827.8 1009 44.5
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 2.9e-224 783.1 686 61.1
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-206 723.8 591 65.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.4e-203 712.2 564 65.6
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.4e-203 712.2 564 65.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 9.9e-188 661.8 1107 37.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.0e-135 488.0 406 62.6
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.5e-87 328.9 405 46.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 5.6e-74 283.9 1033 24.7
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 9.6e-58 229.9 204 55.9
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.5e-55 222.6 208 57.7
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 6.7e-51 207.2 144 68.1
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.1e-50 206.5 164 63.4
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.9e-43 181.4 221 45.7
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 3.1e-40 171.8 177 52.0
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.3e-38 166.4 174 54.0
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 5.0e-38 164.5 645 22.9
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 7.1e-37 160.6 153 56.2
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.5e-34 152.9 363 29.2
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.6e-28 132.9 121 56.2
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.0e-26 125.9 123 51.2
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 2.1e-20 105.9 243 27.6
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.4e-16 93.2 107 46.7
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 7.7e-15 87.4 97 44.3
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.5e-13 83.2 79 65.8
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 4.2e-13 81.6 308 27.6
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.6e-12 79.7 74 52.7
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.0e-11 75.1 77 59.7
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 2.0e-10 72.8 38 73.7
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 9.7e-10 70.5 117 34.2
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.5e-07 62.0 68 50.0
Solyc05g023600.3 Solanum lycopersicum HOM05D004682 ORTHO05D006197 7.7e-07 60.8 139 33.1
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.3e-06 60.1 96 38.5
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.3e-06 60.1 120 35.0


User provided reference genes

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