Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 9.9e-124 446.8 230 100.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 3.6e-105 385.2 230 83.5
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 5.7e-103 377.9 230 83.0
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.7e-102 375.2 230 79.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 4.8e-102 374.8 230 80.4
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.5e-98 361.3 230 77.4
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.1e-97 359.4 230 76.1
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.1e-97 357.8 230 76.5
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.0e-96 357.1 229 76.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.5e-95 353.2 230 74.8
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.5e-95 353.2 230 74.3
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.5e-95 353.2 228 74.1
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.6e-95 352.4 228 74.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.6e-95 352.4 228 74.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 7.4e-95 350.9 230 74.8
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 9.7e-95 350.5 228 73.7
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.7e-94 349.7 223 76.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.2e-94 349.4 227 74.4
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.7e-94 348.6 230 74.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 8.2e-94 347.4 229 72.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.4e-93 346.7 230 73.5
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-93 346.7 228 73.2
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.4e-93 346.7 227 74.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-93 346.3 227 73.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.1e-93 345.5 228 73.2
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 5.3e-93 344.7 227 74.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 7.0e-93 344.4 229 73.8
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 7.0e-93 344.4 229 72.9
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.2e-92 343.6 230 74.3
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.0e-92 342.8 229 73.8
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-92 342.8 229 75.5
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.6e-92 342.4 228 72.8
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.5e-92 342.0 230 73.5
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 73.6
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 71.8
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 5.9e-92 341.3 230 70.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 5.9e-92 341.3 230 73.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 5.0e-91 338.2 227 71.4
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.0e-91 338.2 227 73.1
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 6.5e-91 337.8 225 73.8
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 8.5e-91 337.4 227 71.4
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.5e-91 337.4 227 73.1
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 8.5e-91 337.4 228 71.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 5.5e-90 334.7 229 70.7
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-90 334.7 227 72.2
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 9.4e-90 334.0 227 72.2
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 9.4e-90 334.0 229 70.7
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.2e-89 333.6 227 72.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.2e-89 333.6 227 73.1
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.6e-89 333.2 227 72.2
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.6e-89 333.2 229 69.4
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.1e-89 332.8 227 70.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 3.6e-89 332.0 227 71.8
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 6.1e-89 331.3 227 71.8
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 6.1e-89 331.3 226 71.7
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 8.0e-89 330.9 228 70.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.0e-89 330.9 227 72.7
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.0e-88 330.5 230 70.9
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.0e-88 330.5 224 71.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.0e-88 330.5 228 70.2
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.9e-88 328.6 229 70.7
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.2e-88 328.2 226 69.0
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 5.2e-88 328.2 264 62.9
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 8.8e-88 327.4 208 77.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-87 327.0 226 70.8
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 69.2
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.0e-87 326.2 228 68.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.0e-87 326.2 223 70.0
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 70.0
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 4.4e-87 325.1 227 69.2
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 9.7e-87 323.9 226 71.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.7e-87 323.9 227 70.5
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.7e-87 323.9 218 72.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.3e-86 323.6 227 70.9
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-86 323.2 227 71.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.7e-86 323.2 227 68.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.7e-86 323.2 227 69.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.8e-86 322.4 227 70.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.7e-86 322.0 223 70.0
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 3.7e-86 322.0 227 71.8
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 6.3e-86 321.2 227 70.5
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.3e-86 321.2 227 69.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 6.3e-86 321.2 228 68.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 8.2e-86 320.9 227 70.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.1e-85 320.5 226 68.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.4e-85 320.1 227 70.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 3.1e-85 318.9 227 68.3
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 4.1e-85 318.5 229 69.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 9.1e-85 317.4 227 68.3
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 9.1e-85 317.4 227 68.3
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-84 317.0 225 67.1
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.6e-84 316.6 224 71.4
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.5e-84 315.5 224 71.0
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.5e-84 315.5 228 68.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 5.9e-84 314.7 229 68.1
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 7.7e-84 314.3 224 67.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.7e-83 313.2 229 64.6
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 5.0e-83 311.6 227 66.1
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 9.4e-82 307.4 227 65.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.4e-82 307.4 201 75.1
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.2e-81 307.0 229 64.6
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 2.1e-81 306.2 229 65.1
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.4e-80 303.5 227 64.8
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.4e-80 303.5 227 65.2
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.3e-80 302.8 227 65.2
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.3e-80 302.8 182 86.8
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 8.8e-80 300.8 227 65.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.5e-79 300.1 227 64.8
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.6e-79 299.3 224 65.6
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 2.6e-79 299.3 227 64.8
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 3.3e-79 298.9 227 64.3
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.5e-79 297.7 211 67.3
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 9.7e-79 297.4 224 65.2
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.7e-78 295.4 227 63.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.8e-78 295.0 227 65.6
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 8.2e-78 294.3 210 67.6
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.8e-77 293.1 309 51.5
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.1e-77 292.4 221 63.8
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.3e-75 287.0 204 67.6
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.8e-75 285.4 224 62.9
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 6.5e-75 284.6 195 72.8
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 3.2e-74 282.3 232 64.2
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.4e-74 280.8 219 64.4
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 6.1e-73 278.1 230 62.2
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 5.2e-72 275.0 188 69.1
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 5.2e-72 275.0 227 59.0
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 9.8e-71 270.8 229 60.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 4.5e-68 261.9 180 70.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.0e-67 260.8 197 64.5
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 7.0e-61 238.0 223 56.1
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.0e-61 238.0 237 54.4
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.6e-60 236.9 221 52.0
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.7e-60 236.1 147 78.2
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 8.6e-59 231.1 212 52.8
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 6.1e-57 224.9 215 56.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.6e-55 219.5 133 78.9
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.8e-55 217.6 145 75.9
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.9e-54 216.1 218 53.2
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.3e-50 201.4 124 79.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 5.2e-48 195.3 172 61.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 8.3e-46 188.0 144 63.2
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 7.8e-44 181.4 134 67.9
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 8.6e-43 177.9 142 66.2
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.4e-40 170.6 134 61.2
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 4.0e-40 169.1 144 56.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 6.8e-40 168.3 220 40.5
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-39 167.5 114 71.1
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 3.7e-38 162.5 138 55.8
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-37 161.0 146 58.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.5e-36 156.0 183 44.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 6.6e-35 151.8 126 61.9
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 8.6e-35 151.4 85 85.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.6e-33 147.1 194 44.3
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.8e-32 143.7 85 78.8
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 4.0e-32 142.5 145 51.7
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 4.0e-32 142.5 109 67.9
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 3.8e-30 136.0 85 75.3
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 8.4e-30 134.8 102 68.6
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-28 130.6 85 74.1
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.5e-28 129.4 122 59.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 7.8e-28 128.3 82 78.0
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.9e-27 125.9 85 70.6
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.9e-27 125.9 122 54.1
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 4.3e-26 122.5 95 67.4
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 9.6e-26 121.3 77 77.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 8.1e-25 118.2 108 54.6
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.2e-23 114.4 107 55.1
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 65.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.3e-22 110.9 85 64.7
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.7e-22 110.5 76 71.1
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 5.4e-21 105.5 125 47.2
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.7e-19 100.5 69 66.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 9.6e-18 94.7 51 86.3
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.8e-17 93.2 210 30.5
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.8e-16 90.5 59 69.5
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 3.1e-16 89.7 84 53.6
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 4.5e-15 85.9 102 49.0
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.4e-13 79.0 70 58.6
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.6e-12 77.4 219 26.9
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-11 73.9 60 60.0
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 8.7e-11 71.6 187 26.2
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.3e-10 69.3 66 54.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.6e-09 67.4 49 61.2


User provided reference genes

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