Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 5.6e-197 690.6 323 100.0
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 1.6e-148 529.6 336 76.2
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.1e-139 500.4 331 72.5
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 2.7e-135 485.7 331 71.6
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 6.3e-132 474.6 330 68.2
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 8.2e-132 474.2 329 67.8
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.3e-129 466.8 335 66.6
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 7.2e-128 461.1 335 66.9
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 2.1e-127 459.5 344 65.7
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.9e-126 455.3 332 66.9
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 1.3e-124 450.3 325 65.5
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.4e-123 446.8 332 63.6
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 2.4e-123 446.0 327 65.7
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 1.5e-122 443.4 327 64.2
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 2.0e-122 443.0 333 64.3
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 7.7e-122 441.0 327 65.1
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 2.9e-121 439.1 333 64.0
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 2.9e-121 439.1 343 61.8
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 8.5e-121 437.6 328 65.5
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 9.4e-120 434.1 333 63.4
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.6e-119 433.3 331 61.9
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.6e-119 433.3 341 61.6
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.6e-119 433.3 325 64.0
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 2.1e-119 433.0 343 61.2
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 4.6e-119 431.8 338 61.5
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 7.9e-119 431.0 330 63.3
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 1.0e-118 430.6 330 63.3
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 1.4e-118 430.3 343 61.5
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 2.3e-118 429.5 330 63.6
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 5.1e-118 428.3 345 60.9
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 8.8e-118 427.6 338 61.5
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.1e-117 427.2 334 62.3
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 1.1e-117 427.2 336 61.3
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 4.4e-117 425.2 311 65.3
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 5.7e-117 424.9 338 60.7
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 7.4e-117 424.5 327 62.1
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 9.7e-117 424.1 325 60.3
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.3e-116 423.7 333 62.2
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 2.8e-116 422.5 332 62.7
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 4.8e-116 421.8 337 61.1
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 6.3e-116 421.4 327 61.5
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 8.2e-116 421.0 332 60.8
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 2.4e-115 419.5 348 59.8
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 3.1e-115 419.1 322 64.9
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.1e-115 419.1 333 61.9
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 3.1e-115 419.1 329 61.4
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 5.3e-115 418.3 347 58.2
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 5.3e-115 418.3 333 61.6
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 6.9e-115 417.9 326 61.0
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 6.9e-115 417.9 313 65.5
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 9.1e-115 417.5 335 60.0
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.0e-114 416.4 326 62.6
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 3.4e-114 415.6 341 61.6
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.3e-113 413.7 333 61.6
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 2.2e-113 412.9 331 59.8
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 2.2e-113 412.9 339 58.4
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 2.9e-113 412.5 335 59.7
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 6.5e-113 411.4 327 61.5
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 8.5e-113 411.0 337 59.6
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 8.5e-113 411.0 324 60.8
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.9e-112 409.8 333 61.0
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 3.2e-112 409.1 333 59.2
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 4.2e-112 408.7 335 61.2
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 7.2e-112 407.9 335 61.2
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.1e-111 406.4 333 60.4
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 6.1e-111 404.8 341 59.5
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 3.0e-110 402.5 333 60.4
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 6.7e-110 401.4 346 57.2
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 6.7e-110 401.4 335 60.0
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 1.1e-109 400.6 333 58.9
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.3e-108 397.1 339 58.7
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 8.2e-108 394.4 340 58.2
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 5.3e-107 391.7 344 57.6
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.6e-106 390.2 293 65.2
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 2.6e-106 389.4 359 54.0
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 2.6e-106 389.4 344 56.1
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 4.5e-106 388.7 360 54.2
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 1.7e-105 386.7 367 55.9
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 5.0e-105 385.2 330 58.2
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 8.5e-105 384.4 319 58.3
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 3.6e-103 379.0 311 60.5
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 3.6e-103 379.0 319 58.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.0e-103 377.9 315 58.1
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.1e-99 367.5 321 54.8
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.4e-99 367.1 325 56.3
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 2.4e-99 366.3 326 55.2
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.6e-98 363.6 392 51.8
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.3e-97 360.5 399 49.9
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.7e-97 360.1 322 55.3
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 2.9e-97 359.4 383 50.9
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 6.5e-97 358.2 322 54.7
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 1.9e-96 356.7 399 49.6
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 5.5e-96 355.1 426 44.8
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 2.7e-95 352.8 273 63.4
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 2.7e-95 352.8 409 49.1
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 8.0e-95 351.3 339 52.8
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.4e-94 350.5 338 53.0
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 4.4e-93 345.5 320 55.0
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 4.5e-90 335.5 298 56.4
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.7e-89 333.6 285 57.9
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 4.2e-88 328.9 288 56.6
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 3.6e-87 325.9 282 58.2
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 4.7e-87 325.5 329 51.4
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 2.3e-86 323.2 328 51.5
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 1.2e-85 320.9 323 50.8
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 1.2e-85 320.9 323 50.8
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 7.5e-85 318.2 326 50.9
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.6e-82 310.5 320 49.7
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 5.6e-80 302.0 316 49.4
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 1.4e-78 297.4 263 57.8
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 6.4e-76 288.5 355 43.7
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 7.0e-75 285.0 331 45.3
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 6.6e-73 278.5 325 48.0
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 2.5e-72 276.6 366 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.3e-72 275.8 427 37.0
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 5.6e-72 275.4 492 35.4
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 3.6e-71 272.7 396 41.7
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 5.2e-70 268.9 323 45.2
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 6.8e-70 268.5 175 70.3
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 4.4e-69 265.8 321 44.2
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 2.4e-67 260.0 318 42.8
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.4e-62 244.2 423 35.0
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 5.2e-62 242.3 326 39.9
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 7.5e-61 238.4 328 40.9
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.2e-60 236.9 328 40.5
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.9e-60 236.5 316 39.6
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.1e-48 198.0 418 32.5
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 3.3e-48 196.4 218 51.4
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 7.1e-43 178.7 215 47.4
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 1.5e-40 171.0 98 73.5
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 2.5e-40 170.2 205 46.3
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 4.3e-32 142.9 111 62.2
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.2e-29 134.8 249 36.1
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 4.6e-18 96.3 164 34.8
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 3.0e-17 93.6 117 44.4
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.8e-07 60.5 63 55.6
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 3.7e-07 60.1 128 33.6
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 3.7e-07 60.1 121 28.9
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 4.8e-07 59.7 123 32.5
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 4.8e-07 59.7 123 35.8
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 6.3e-07 59.3 128 32.8
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 6.3e-07 59.3 125 34.4
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 8.2e-07 58.9 128 32.8
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 8.2e-07 58.9 128 32.8
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 8.2e-07 58.9 128 32.8
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 8.2e-07 58.9 128 32.8
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.1e-06 58.5 65 46.2
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 1.4e-06 58.2 126 31.0
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 2.4e-06 57.4 123 31.7
PGR119G0593 Punica granatum HOM05D002394 ORTHO05D002508 3.1e-06 57.0 117 29.9
Aa31LG9G16630 Aethionema arabicum HOM05D002394 ORTHO05D002508 5.3e-06 56.2 126 31.7
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 5.3e-06 56.2 128 32.8
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 5.3e-06 56.2 128 32.8
Os03g0427000 Oryza sativa ssp. japonica HOM05D002394 ORTHO05D002508 5.3e-06 56.2 123 30.1
Phvul.008G035700 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 5.3e-06 56.2 123 31.7
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 5.3e-06 56.2 123 31.7
BcaB01g05054 Brassica carinata HOM05D002394 ORTHO05D002508 6.9e-06 55.8 128 32.8
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 6.9e-06 55.8 128 32.8
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 6.9e-06 55.8 128 32.8
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 6.9e-06 55.8 128 32.8
Glyma.08G242000 Glycine max HOM05D002394 ORTHO05D002508 6.9e-06 55.8 123 31.7


User provided reference genes

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