Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00352 Striga asiatica HOM05D009637 ORTHO05D012223 9.2e-226 786.6 398 100.0
SGA_v2.0_scaffold1G00355 Striga asiatica HOM05D021624 ORTHO05D015999 1.3e-62 244.6 133 95.5
Migut.D00139 Erythranthe guttata HOM05D021624 ORTHO05D015999 8.7e-43 178.7 131 68.7
MSTRG.18138 Avicennia marina HOM05D021624 ORTHO05D015999 3.8e-38 163.3 134 64.9
Os01g0312600 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 1.5e-34 151.4 193 48.7
unitig_22.g5237 Utricularia gibba HOM05D021624 ORTHO05D015999 7.7e-31 139.0 135 55.6
MSTRG.21643 Avicennia marina HOM05D021624 ORTHO05D015999 1.7e-30 137.9 131 55.0
unitig_0.g675 Utricularia gibba HOM05D021624 ORTHO05D015999 6.5e-30 136.0 135 56.3
Os01g0788451 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 1.6e-23 114.8 220 40.0
Os04g0641250 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 8.0e-20 102.4 174 40.8
SGA_v2.0_scaffold80G25886 Striga asiatica HOM05D009637 ORTHO05D012223 1.0e-19 102.1 218 37.6
SGA_v2.0_scaffold71G23926 Striga asiatica HOM05D009637 ORTHO05D012223 1.1e-18 98.6 116 55.2
MELO3C030878.2 Cucumis melo HOM05D009637 ORTHO05D012223 1.3e-17 95.1 149 40.9
Zm00001eb014040 Zea mays HOM05D009637 ORTHO05D012223 7.0e-16 89.4 234 34.2
SGA_v2.0_scaffold61G21246 Striga asiatica HOM05D009637 ORTHO05D012223 9.1e-16 89.0 191 37.7
Os07g0675133 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 2.9e-14 84.0 105 54.3
unitig_51.g30985 Utricularia gibba HOM05D009637 ORTHO05D012223 2.9e-14 84.0 209 36.8
Os01g0234433 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 3.2e-13 80.5 226 33.6
Os09g0545550 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 3.2e-13 80.5 227 31.7
FAN27G0990 Fragaria x ananassa HOM05D009637 ORTHO05D012223 1.2e-12 78.6 107 47.7
SGA_v2.0_scaffold118G32470 Striga asiatica HOM05D009637 ORTHO05D012223 1.6e-12 78.2 204 32.8
Os01g0880350 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 8.0e-12 75.9 186 36.6
Sc08g0009140 Simmondsia chinensis HOM05D009637 ORTHO05D012223 1.8e-11 74.7 162 37.0
SGA_v2.0_scaffold71G23923 Striga asiatica HOM05D009637 ORTHO05D012223 1.2e-10 72.0 178 35.4
CAN.G1155.33 Capsicum annuum HOM05D022522 ORTHO05D015999 2.6e-10 70.9 121 36.4
Os02g0783050 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 9.8e-10 68.9 100 48.0
PGSC0003DMG400020591 Solanum tuberosum HOM05D022522 ORTHO05D015999 1.3e-09 68.6 113 38.1
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.7e-09 68.2 108 38.0
Solyc09g092350.1 Solanum lycopersicum HOM05D022522 ORTHO05D015999 1.7e-09 68.2 113 36.3
Sopen09g035250 Solanum pennellii HOM05D022522 ORTHO05D015999 2.2e-09 67.8 113 36.3
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 2.8e-09 67.4 132 33.3
Peaxi162Scf00047g00005 Petunia axillaris HOM05D022522 ORTHO05D015999 1.4e-08 65.1 121 34.7
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 2.4e-08 64.3 131 29.8
Oeu011950.2 Olea europaea HOM05D004055 ORTHO05D004795 2.4e-08 64.3 78 39.7
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 2.0e-07 61.2 104 29.8
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 5.9e-07 59.7 115 26.1
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 7.7e-07 59.3 121 32.2
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 7.7e-07 59.3 131 33.6
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.3e-06 58.5 103 29.1
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.7e-06 58.2 130 29.2
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 1.7e-06 58.2 109 33.0
Os01g0254350 Oryza sativa ssp. japonica HOM05D009637 ORTHO05D012223 1.7e-06 58.2 108 42.6
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 2.2e-06 57.8 132 32.6
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 2.2e-06 57.8 106 31.1
Sed0024461 Sechium edule HOM05D003556 ORTHO05D003404 2.2e-06 57.8 104 29.8
FAN12G2112 Fragaria x ananassa HOM05D009637 ORTHO05D012223 2.9e-06 57.4 65 47.7
COL.COLO4_23319 Corchorus olitorius HOM05D003556 ORTHO05D003404 5.0e-06 56.6 148 31.1
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 5.0e-06 56.6 131 29.8
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 5.0e-06 56.6 116 28.4
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 8.5e-06 55.8 108 30.6


User provided reference genes

Program Settings