Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 4544.2 2258 100.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 3046.9 2198 70.5
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 3045.8 2221 70.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2760.7 2255 64.2
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2636.7 2243 61.2
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2599.7 2249 60.7
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2586.6 2229 60.8
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2570.4 2256 59.7
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2563.5 2242 59.6
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2555.0 2259 59.2
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2550.4 2249 60.1
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2530.4 2229 59.6
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2523.4 2229 59.4
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2516.5 2232 59.3
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2510.3 2238 59.6
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2505.7 2242 58.7
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2485.3 2249 58.6
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2471.0 2238 57.8
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2462.6 2229 57.8
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2449.5 2243 57.2
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2449.5 2243 57.8
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2447.2 2244 57.1
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2443.3 2238 57.8
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2441.0 2245 57.1
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2425.2 2248 57.5
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2424.4 2246 57.2
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2422.1 2244 57.4
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2417.1 2255 57.4
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2405.6 2247 57.3
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2401.7 2181 58.1
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2399.4 2202 58.4
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2399.0 2233 57.3
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2395.2 2250 57.0
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2240 56.6
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2376.3 2253 56.7
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2373.6 2230 56.2
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2370.1 2256 56.5
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2359.3 2219 57.0
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2357.8 2236 56.5
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2357.8 2238 56.0
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2356.3 2235 55.6
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2343.5 2241 56.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2341.2 2240 55.8
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2332.0 2275 55.5
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2328.9 2244 55.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2327.4 2245 55.7
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2326.6 2254 55.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2321.6 2229 55.1
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2315.8 2217 56.0
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2314.7 2237 56.0
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2310.0 2222 55.6
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2308.5 2195 57.3
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2301.2 2223 55.2
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2300.8 2240 55.0
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2300.0 2231 55.2
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2296.9 2254 54.5
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2295.8 2222 55.0
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2269.6 2224 54.9
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2258.0 2198 54.2
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2255.3 2225 55.1
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2255.3 2233 55.0
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2251.9 2230 54.8
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2251.1 2231 55.1
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2248.0 2239 53.6
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2241.5 2224 54.9
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2229.5 2269 53.2
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2207.6 2189 54.8
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2207.6 2189 54.8
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2207.2 2190 54.8
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2204.1 2184 54.8
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2204.1 2184 54.8
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2199.5 2235 54.1
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2199.5 2188 54.6
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2196.8 2193 54.5
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2195.6 2191 54.5
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2178.3 2190 54.2
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2178.3 2252 53.2
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2129.0 2348 50.9
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2084.7 2188 52.8
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2045.4 2022 55.5
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2036.2 2338 49.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2015.4 1832 57.3
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2004.9 1908 55.2
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 1986.5 1832 57.4
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 1968.0 1835 57.3
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1961.4 2253 49.0
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1951.0 2201 49.4
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1845.5 1729 57.0
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1765.0 2200 46.9
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1699.1 2396 42.5
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1662.9 1429 61.2
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1548.9 2180 43.4
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1477.6 1720 47.9
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1436.0 1372 56.1
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1384.4 2376 38.3
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1334.7 2359 36.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1333.5 2217 38.0
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1216.4 1128 58.5
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1199.5 1026 61.1
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1100.5 947 61.0
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.5e-311 1073.9 1046 54.8
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.5e-311 1073.5 1216 49.3
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 5.8e-285 985.7 1415 42.8
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 4.3e-280 969.5 783 64.8
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 3.4e-261 906.7 3172 26.6
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.5e-261 906.4 1016 51.2
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 5.8e-208 729.9 840 47.0
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.6e-202 711.8 724 53.5
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.3e-201 708.0 1318 35.8
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.9e-158 565.5 959 38.4
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 3.0e-148 531.6 2351 26.2
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.8e-109 402.1 455 45.9
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.0e-101 374.0 377 54.6
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.6e-88 333.2 728 33.7
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 8.1e-85 320.9 322 54.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-79 303.1 309 53.4
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 9.0e-76 290.8 270 59.6
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 5.1e-71 275.0 233 61.4
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 5.8e-67 261.5 318 47.8
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 7.4e-62 244.6 234 56.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 6.9e-52 211.5 273 44.0
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 7.1e-49 201.4 175 60.6
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.5e-38 166.4 141 61.0
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.1e-36 161.0 138 59.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 4.1e-36 159.1 220 44.5
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.0e-34 154.5 97 77.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.5e-34 151.8 481 28.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.7e-29 136.0 118 57.6
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 4.5e-27 129.0 252 32.5
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 8.5e-26 124.8 65 90.8
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 4.4e-22 112.5 99 61.6
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.1e-20 107.8 101 56.4
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.0e-12 78.6 102 40.2
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.6e-08 67.4 608 19.2
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 4.4e-06 59.3 55 54.5


User provided reference genes

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