Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00318 Striga asiatica HOM05D048429 ORTHO05D001079 2.6e-56 221.9 113 100.0
SGA_v2.0_scaffold1G00316 Striga asiatica HOM05D048429 ORTHO05D399111 2.1e-10 69.3 117 41.9
SEGI_29153 Sequoiadendron giganteum HOM05D000098 ORTHO05D001079 1.4e-09 66.6 129 34.1
Sopen01g046830 Solanum pennellii HOM05D000098 ORTHO05D001079 1.8e-09 66.2 86 36.0
CANSAT11G1808 Cannabis sativa HOM05D000098 ORTHO05D001079 5.2e-09 64.7 112 33.0
Lalb_Chr16g0379441 Lupinus albus HOM05D000098 ORTHO05D001079 5.2e-09 64.7 125 33.6
Sopen01g046820 Solanum pennellii HOM05D000098 ORTHO05D001079 6.8e-09 64.3 86 33.7
Solyc01g104390.2 Solanum lycopersicum HOM05D000098 ORTHO05D001079 8.9e-09 63.9 86 34.9
Nitab4.5_0003819g0030 Nicotiana tabacum HOM05D000098 ORTHO05D001079 1.2e-08 63.5 120 31.7
CiPaw.05G014500 Carya illinoinensis HOM05D000098 ORTHO05D001079 1.5e-08 63.2 125 33.6
Manes.18G085600 Manihot esculenta HOM05D000098 ORTHO05D001079 3.4e-08 62.0 125 35.2
Peaxi162Scf00324g00019 Petunia axillaris HOM05D000098 ORTHO05D001079 3.4e-08 62.0 69 39.1
PGR102G2984 Punica granatum HOM05D000098 ORTHO05D000546 3.4e-08 62.0 117 35.0
QL11p032113 Quercus lobata HOM05D000098 ORTHO05D001079 3.4e-08 62.0 83 37.3
RcHm_v2.0_Chr7g0224441 Rosa chinensis HOM05D000098 ORTHO05D001079 3.4e-08 62.0 125 34.4
PGSC0003DMG400039863 Solanum tuberosum HOM05D000098 ORTHO05D001079 3.4e-08 62.0 86 33.7
Nitab4.5_0003819g0060 Nicotiana tabacum HOM05D000098 ORTHO05D001079 4.4e-08 61.6 120 30.8
Rhsim11G0130800 Rhododendron simsii HOM05D000098 ORTHO05D001079 4.4e-08 61.6 124 33.9
Nitab4.5_0025961g0010 Nicotiana tabacum HOM05D000098 ORTHO05D001079 7.5e-08 60.8 78 34.6
Rhsim11G0130700 Rhododendron simsii HOM05D000098 ORTHO05D001079 7.5e-08 60.8 125 32.0
SalBow5G3549 Salvia bowleyana HOM05D000098 ORTHO05D001079 7.5e-08 60.8 124 33.9
PGSC0003DMG400023782 Solanum tuberosum HOM05D000098 ORTHO05D001079 7.5e-08 60.8 86 32.6
PGSC0003DMG400023783 Solanum tuberosum HOM05D000098 ORTHO05D001079 7.5e-08 60.8 86 32.6
PGSC0003DMG400023784 Solanum tuberosum HOM05D000098 ORTHO05D001079 7.5e-08 60.8 86 32.6
SalBow2G1051 Salvia bowleyana HOM05D000098 ORTHO05D000546 9.9e-08 60.5 92 37.0
CSS0012219 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000546 1.3e-07 60.1 70 38.6
CSS0029760 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000546 1.3e-07 60.1 70 38.6
GSVIVG01015562001 Vitis vinifera HOM05D000098 ORTHO05D000546 1.3e-07 60.1 113 28.3
Nitab4.5_0002245g0190 Nicotiana tabacum HOM05D000098 ORTHO05D001079 1.7e-07 59.7 123 31.7
Peaxi162Scf00011g00232 Petunia axillaris HOM05D000098 ORTHO05D001079 1.7e-07 59.7 120 30.8
QL02p098545 Quercus lobata HOM05D000098 ORTHO05D001079 1.7e-07 59.7 125 36.8
CAN.G1305.37 Capsicum annuum HOM05D000098 ORTHO05D001079 2.2e-07 59.3 120 29.2
Hma1.2p1_0217F.1_g091950 Hydrangea macrophylla HOM05D000098 ORTHO05D001079 2.2e-07 59.3 121 34.7
Medtr2g043790 Medicago truncatula HOM05D000098 ORTHO05D001079 2.2e-07 59.3 75 42.7
PGR044G2550 Punica granatum HOM05D000098 ORTHO05D001079 2.2e-07 59.3 125 36.0
QL02p098548 Quercus lobata HOM05D000098 ORTHO05D001079 2.2e-07 59.3 125 36.0
Thecc.02G040400 Theobroma cacao HOM05D000098 ORTHO05D001079 2.2e-07 59.3 125 36.0
MD15G1418100 Malus domestica HOM05D000098 ORTHO05D001079 2.9e-07 58.9 125 32.0
ClCG09G002920 Citrullus lanatus HOM05D000098 ORTHO05D000546 3.7e-07 58.5 71 33.8
CsaV3_7G032360 Cucumis sativus L. HOM05D000098 ORTHO05D000546 3.7e-07 58.5 127 29.1
FvH4_5g30150 Fragaria vesca HOM05D000098 ORTHO05D001079 3.7e-07 58.5 93 32.3
FAN18G0920 Fragaria x ananassa HOM05D000098 ORTHO05D001079 3.7e-07 58.5 93 32.3
PGSC0003DMG401030920 Solanum tuberosum HOM05D000098 ORTHO05D000546 3.7e-07 58.5 92 33.7
SGA_v2.0_scaffold1G00323 Striga asiatica HOM05D000098 ORTHO05D001079 3.7e-07 58.5 126 38.1
ATR0736G057 Amborella trichopoda HOM05D000098 ORTHO05D001079 4.9e-07 58.2 73 41.1
Nitab4.5_0003819g0010 Nicotiana tabacum HOM05D000098 ORTHO05D001079 4.9e-07 58.2 127 37.0
Oeu042098.1 Olea europaea HOM05D000098 ORTHO05D000546 4.9e-07 58.2 118 32.2
QL05p029690 Quercus lobata HOM05D000098 ORTHO05D000546 4.9e-07 58.2 71 39.4
MSTRG.22742 Avicennia marina HOM05D000098 ORTHO05D000546 6.4e-07 57.8 91 35.2
EL10Ac8g18692 Beta vulgaris HOM05D000098 ORTHO05D000546 6.4e-07 57.8 128 30.5
HanXRQChr10g0315691 Helianthus annuus HOM05D000098 ORTHO05D000546 6.4e-07 57.8 131 31.3
Prupe.8G203900 Prunus persica HOM05D000098 ORTHO05D001079 6.4e-07 57.8 68 41.2
Rhsim08G0213500 Rhododendron simsii HOM05D000098 ORTHO05D000546 6.4e-07 57.8 121 30.6
CSS0036152 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 8.3e-07 57.4 123 34.1
CAN.G407.86 Capsicum annuum HOM05D000098 ORTHO05D000546 8.3e-07 57.4 91 31.9
CiPaw.01G247300 Carya illinoinensis HOM05D000098 ORTHO05D000546 8.3e-07 57.4 70 37.1
FAN13G0650 Fragaria x ananassa HOM05D000098 ORTHO05D001079 8.3e-07 57.4 65 40.0
FAN13G1370 Fragaria x ananassa HOM05D000098 ORTHO05D001079 8.3e-07 57.4 125 33.6
Nitab4.5_0025961g0020 Nicotiana tabacum HOM05D000098 ORTHO05D001079 8.3e-07 57.4 121 33.1
Os03g0850900 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 8.3e-07 57.4 127 35.4
Peaxi162Scf00673g00123 Petunia axillaris HOM05D000098 ORTHO05D001079 8.3e-07 57.4 86 32.6
Peaxi162Scf00891g00125 Petunia axillaris HOM05D000098 ORTHO05D000546 8.3e-07 57.4 122 31.1
Sed0009846 Sechium edule HOM05D000098 ORTHO05D001079 8.3e-07 57.4 121 33.1
Hund26754 Selenicereus undatus HOM05D006798 ORTHO05D001079 8.3e-07 57.4 79 38.0
CiPaw.01G247700 Carya illinoinensis HOM05D000098 ORTHO05D000546 1.1e-06 57.0 69 34.8
Ciclev10027232m.g Citrus clementina HOM05D000098 ORTHO05D000546 1.1e-06 57.0 69 36.2
Haze_25550 Corylus avellana HOM05D000098 ORTHO05D000546 1.1e-06 57.0 116 30.2
FAN04G1001 Fragaria x ananassa HOM05D000098 ORTHO05D001079 1.1e-06 57.0 125 33.6
FAN26G3169 Fragaria x ananassa HOM05D000098 ORTHO05D000546 1.1e-06 57.0 116 29.3
Gohir.A09G085800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.1e-06 57.0 120 33.3
Prupe.1G562300 Prunus persica HOM05D000098 ORTHO05D001079 1.1e-06 57.0 94 33.0
vmacro20576 Vaccinium macrocarpon HOM05D000098 ORTHO05D000546 1.1e-06 57.0 124 30.6
EL10Ac8g18689 Beta vulgaris HOM05D000098 ORTHO05D000546 1.4e-06 56.6 116 31.0
Migut.B00672 Erythranthe guttata HOM05D000098 ORTHO05D001079 1.4e-06 56.6 70 38.6
Medtr8g089110 Medicago truncatula HOM05D000098 ORTHO05D001079 1.4e-06 56.6 122 33.6
RcHm_v2.0_Chr5g0060181 Rosa chinensis HOM05D000098 ORTHO05D000546 1.4e-06 56.6 111 26.1
Sed0007016 Sechium edule HOM05D000098 ORTHO05D001079 1.4e-06 56.6 115 33.0
TPR.G33045 Trifolium pratense HOM05D000098 ORTHO05D001079 1.4e-06 56.6 66 40.9
Os11g0428800 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 1.9e-06 56.2 72 36.1
Psat4g037160 Pisum sativum HOM05D000098 ORTHO05D000546 1.9e-06 56.2 90 31.1
Potri.001G192100 Populus trichocarpa HOM05D000098 ORTHO05D000546 1.9e-06 56.2 90 31.1
Sed0025625 Sechium edule HOM05D000098 ORTHO05D000546 1.9e-06 56.2 118 29.7
PGSC0003DMG400023751 Solanum tuberosum HOM05D000098 ORTHO05D001079 1.9e-06 56.2 67 43.3
GSVIVG01023002001 Vitis vinifera HOM05D000098 ORTHO05D001079 1.9e-06 56.2 124 34.7
arahy.Tifrunner.gnm1.ann1.TZW06C Arachis hypogaea HOM05D000098 ORTHO05D001079 2.4e-06 55.8 119 33.6
CSS0035356 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 2.4e-06 55.8 123 33.3
CAN.G564.1 Capsicum annuum HOM05D000098 ORTHO05D001079 2.4e-06 55.8 86 30.2
Cfa005538 Carpinus fangiana HOM05D000098 ORTHO05D001079 2.4e-06 55.8 125 35.2
Ciclev10027144m.g Citrus clementina HOM05D000098 ORTHO05D000546 2.4e-06 55.8 129 28.7
Migut.B00676 Erythranthe guttata HOM05D000098 ORTHO05D001079 2.4e-06 55.8 68 39.7
Gorai.006G102000 Gossypium raimondii HOM05D000098 ORTHO05D001079 2.4e-06 55.8 120 32.5
HanXRQChr09g0241571 Helianthus annuus HOM05D000098 ORTHO05D000546 2.4e-06 55.8 113 30.1
Nitab4.5_0004833g0020 Nicotiana tabacum HOM05D000098 ORTHO05D000546 2.4e-06 55.8 93 32.3
Phvul.010G155900 Phaseolus vulgaris HOM05D000098 ORTHO05D000546 2.4e-06 55.8 74 39.2
Potri.001G209300 Populus trichocarpa HOM05D000098 ORTHO05D001079 2.4e-06 55.8 126 31.7
RcHm_v2.0_Chr2g0087971 Rosa chinensis HOM05D000098 ORTHO05D000546 2.4e-06 55.8 126 33.3
Sed0020779 Sechium edule HOM05D000098 ORTHO05D001079 2.4e-06 55.8 125 33.6
TAR625G1110 Trochodendron aralioides HOM05D000098 ORTHO05D000546 2.4e-06 55.8 89 33.7
unitig_0.g1344 Utricularia gibba HOM05D000098 ORTHO05D000523 2.4e-06 55.8 114 30.7
GSVIVG01017332001 Vitis vinifera HOM05D000098 ORTHO05D000546 2.4e-06 55.8 129 27.9
GSVIVG01023001001 Vitis vinifera HOM05D000098 ORTHO05D001079 2.4e-06 55.8 123 33.3
GSVIVG01028654001 Vitis vinifera HOM05D000098 ORTHO05D001079 2.4e-06 55.8 71 39.4
Ah.05g167480 Amaranthus hybridus HOM05D000098 ORTHO05D001079 3.2e-06 55.5 116 31.0
CiPaw.05G043200 Carya illinoinensis HOM05D000098 ORTHO05D001079 3.2e-06 55.5 112 34.8
Nitab4.5_0000028g0180 Nicotiana tabacum HOM05D000098 ORTHO05D000546 3.2e-06 55.5 120 30.0
Phvul.009G133600 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 3.2e-06 55.5 125 32.0
Solyc01g104400.3 Solanum lycopersicum HOM05D000098 ORTHO05D001079 3.2e-06 55.5 67 43.3
HPP92_009440 Vanilla planifolia HOM05D000098 ORTHO05D001079 3.2e-06 55.5 82 32.9
arahy.Tifrunner.gnm1.ann1.HG4UM5 Arachis hypogaea HOM05D000098 ORTHO05D000546 4.1e-06 55.1 89 32.6
CiPaw.01G247600 Carya illinoinensis HOM05D000098 ORTHO05D000546 4.1e-06 55.1 67 34.3
Hma1.2p1_0018F.1_g012220 Hydrangea macrophylla HOM05D000098 ORTHO05D000546 4.1e-06 55.1 127 28.3
Hma1.2p1_1144F.1_g261250 Hydrangea macrophylla HOM05D000098 ORTHO05D000546 4.1e-06 55.1 119 30.3
Lalb_Chr08g0240861 Lupinus albus HOM05D000098 ORTHO05D001079 4.1e-06 55.1 129 34.1
PSO017G0377 Papaver somniferum HOM05D000098 ORTHO05D000546 4.1e-06 55.1 119 29.4
Peaxi162Scf00559g00422 Petunia axillaris HOM05D000098 ORTHO05D001079 4.1e-06 55.1 74 35.1
Rhsim08G0213300 Rhododendron simsii HOM05D000098 ORTHO05D000546 4.1e-06 55.1 121 28.9
RcHm_v2.0_Chr2g0088011 Rosa chinensis HOM05D000098 ORTHO05D000546 4.1e-06 55.1 117 30.8
PGSC0003DMG400039951 Solanum tuberosum HOM05D000098 ORTHO05D001079 4.1e-06 55.1 85 35.3
TPR.G31742 Trifolium pratense HOM05D000098 ORTHO05D001079 4.1e-06 55.1 85 36.5
TPR.G6245 Trifolium pratense HOM05D000098 ORTHO05D001079 4.1e-06 55.1 122 33.6
TAR625G0390 Trochodendron aralioides HOM05D000098 ORTHO05D000546 4.1e-06 55.1 70 37.1
vmacro01772 Vaccinium macrocarpon HOM05D000098 ORTHO05D001079 4.1e-06 55.1 123 33.3
arahy.Tifrunner.gnm1.ann1.MZFE1X Arachis hypogaea HOM05D000098 ORTHO05D000546 5.4e-06 54.7 122 29.5
EL10Ac1g01421 Beta vulgaris HOM05D000098 ORTHO05D001079 5.4e-06 54.7 124 32.3
MELO3C023421.2 Cucumis melo HOM05D000098 ORTHO05D000546 5.4e-06 54.7 126 30.2
Dinv25788 Davidia involucrata HOM05D000098 ORTHO05D001079 5.4e-06 54.7 79 36.7
Dinv36504 Davidia involucrata HOM05D000020 ORTHO05D000543 5.4e-06 54.7 125 29.6
Duzib132G0132 Durio zibethinus HOM05D000098 ORTHO05D001079 5.4e-06 54.7 124 33.1
FAN18G1524 Fragaria x ananassa HOM05D000098 ORTHO05D001228 5.4e-06 54.7 68 38.2
Glyma.05G169900 Glycine max HOM05D000098 ORTHO05D001079 5.4e-06 54.7 122 33.6
Gohir.D09G085900 Gossypium hirsutum HOM05D000098 ORTHO05D001079 5.4e-06 54.7 120 32.5
Peaxi162Scf00011g00016 Petunia axillaris HOM05D000098 ORTHO05D001079 5.4e-06 54.7 120 32.5
SGA_v2.0_scaffold5G02691 Striga asiatica HOM05D000098 ORTHO05D000546 5.4e-06 54.7 71 33.8
AT5G20230 Arabidopsis thaliana HOM05D000098 ORTHO05D000546 7.1e-06 54.3 73 34.2
arahy.Tifrunner.gnm1.ann1.JU9HZZ Arachis hypogaea HOM05D000098 ORTHO05D001079 7.1e-06 54.3 118 32.2
CSS0023141 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 7.1e-06 54.3 124 32.3
CSS0036376 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 7.1e-06 54.3 68 38.2
CANSAT11G1533 Cannabis sativa HOM05D000098 ORTHO05D001079 7.1e-06 54.3 81 34.6
CANSAT56G3398 Cannabis sativa HOM05D000098 ORTHO05D000546 7.1e-06 54.3 89 31.5
CiPaw.01G247500 Carya illinoinensis HOM05D000098 ORTHO05D000546 7.1e-06 54.3 122 28.7
CDE02G3230 Ceratophyllum demersum HOM05D000098 ORTHO05D000546 7.1e-06 54.3 90 31.1
Ca_17817_v3 Cicer arietinum L. HOM05D000098 ORTHO05D001079 7.1e-06 54.3 123 34.1
Migut.I00768 Erythranthe guttata HOM05D000098 ORTHO05D000546 7.1e-06 54.3 93 34.4
Eucgr.C04239 Eucalyptus grandis HOM05D000098 ORTHO05D000546 7.1e-06 54.3 133 31.6
Eucgr.L02351 Eucalyptus grandis HOM05D000098 ORTHO05D000546 7.1e-06 54.3 133 31.6
FAN04G2162 Fragaria x ananassa HOM05D000098 ORTHO05D001228 7.1e-06 54.3 64 40.6
Lj5A72T17 Lonicera japonica HOM05D000098 ORTHO05D000546 7.1e-06 54.3 120 30.0
Solyc03g116690.3 Solanum lycopersicum HOM05D000098 ORTHO05D000546 7.1e-06 54.3 118 28.0
Sopen03g035600 Solanum pennellii HOM05D000098 ORTHO05D000546 7.1e-06 54.3 118 28.0
vmacro18993 Vaccinium macrocarpon HOM05D000098 ORTHO05D000546 7.1e-06 54.3 119 31.9
Actinidia39051 Actinidia chinensis HOM05D000098 ORTHO05D001079 9.2e-06 53.9 126 34.9
arahy.Tifrunner.gnm1.ann1.98HCYL Arachis hypogaea HOM05D000098 ORTHO05D000523 9.2e-06 53.9 75 34.7
Gohir.A02G068204 Gossypium hirsutum HOM05D000098 ORTHO05D001079 9.2e-06 53.9 71 45.1
Gohir.D02G074600 Gossypium hirsutum HOM05D000098 ORTHO05D001079 9.2e-06 53.9 67 47.8
Gorai.005G084000 Gossypium raimondii HOM05D000098 ORTHO05D001079 9.2e-06 53.9 67 47.8
HanXRQChr11g0340531 Helianthus annuus HOM05D000098 ORTHO05D001079 9.2e-06 53.9 69 39.1
Nitab4.5_0007069g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000546 9.2e-06 53.9 119 29.4
Os03g0709300 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 9.2e-06 53.9 125 35.2
Peaxi162Scf00332g00771 Petunia axillaris HOM05D000098 ORTHO05D000546 9.2e-06 53.9 119 27.7
Prupe.3G086500 Prunus persica HOM05D000098 ORTHO05D000546 9.2e-06 53.9 68 41.2
Sabra01G0161600 Salix brachista HOM05D000098 ORTHO05D001079 9.2e-06 53.9 126 31.7
Sabra02G0183900 Salix brachista HOM05D000098 ORTHO05D001079 9.2e-06 53.9 65 38.5
VMungo1215G2554 Vigna mungo HOM05D000098 ORTHO05D000546 9.2e-06 53.9 67 34.3


User provided reference genes

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