Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.3e-55 219.5 240 100.0
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.7e-27 127.5 204 76.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.4e-26 123.6 203 71.9
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.2e-25 121.3 204 62.7
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.0e-24 118.2 204 68.6
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 6.6e-24 115.5 205 76.1
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.9e-23 114.0 205 56.6
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.3e-23 112.1 204 73.5
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.2e-22 111.3 204 65.2
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.6e-22 110.9 203 68.5
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 2.8e-22 110.2 205 72.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.8e-21 107.5 200 68.5
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.2e-21 105.9 204 55.9
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.2e-21 105.9 203 70.4
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-20 104.8 203 69.5
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 3.4e-20 103.2 206 70.9
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 4.4e-20 102.8 204 72.1
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.7e-19 100.9 204 71.6
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.7e-19 100.9 203 72.4
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 2.2e-19 100.5 203 66.5
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.9e-19 100.1 204 62.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 3.8e-19 99.8 204 57.8
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 3.8e-19 99.8 201 71.1
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 6.4e-19 99.0 224 62.9
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.1e-18 98.2 204 69.1
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.1e-18 98.2 194 75.8
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.4e-18 97.8 205 68.8
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.1e-18 95.5 203 59.1
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 7.1e-18 95.5 171 66.7
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 9.3e-18 95.1 204 65.2
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 9.3e-18 95.1 204 62.7
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 9.3e-18 95.1 202 67.3
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 9.3e-18 95.1 205 59.0
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.6e-17 94.4 201 64.2
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.7e-17 93.6 204 70.1
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.7e-17 93.6 199 63.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 2.7e-17 93.6 204 71.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 4.6e-17 92.8 161 73.9
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 6.0e-17 92.4 206 69.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.0e-16 91.7 203 64.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.0e-16 91.7 206 68.0
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 2.3e-16 90.5 214 57.5
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.3e-16 90.5 201 63.2
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.3e-16 90.5 201 61.2
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.0e-16 90.1 203 48.8
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.9e-16 89.7 196 63.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.9e-16 89.7 194 69.1
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.9e-16 89.7 208 55.3
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.6e-16 89.0 207 65.7
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 6.6e-16 89.0 160 82.5
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 8.7e-16 88.6 189 65.6
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 8.7e-16 88.6 206 48.5
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 1.5e-15 87.8 206 70.9
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.9e-15 87.4 202 61.4
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 2.5e-15 87.0 205 67.3
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.3e-15 86.7 196 56.6
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 5.6e-15 85.9 214 56.5
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 5.6e-15 85.9 207 68.1
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 9.6e-15 85.1 163 67.5
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.6e-15 85.1 204 70.6
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 9.6e-15 85.1 163 65.0
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.6e-14 84.3 133 82.7
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 2.8e-14 83.6 201 67.2
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 3.6e-14 83.2 191 66.5
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 4.8e-14 82.8 218 60.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 8.1e-14 82.0 160 80.6
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.1e-13 81.6 135 77.0
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 1.1e-13 81.6 162 75.9
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 1.8e-13 80.9 164 54.3
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.8e-13 80.9 159 69.2
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.8e-13 80.9 134 77.6
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 4.0e-13 79.7 214 57.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.3e-13 79.3 92 54.3
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 5.3e-13 79.3 183 67.2
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 6.9e-13 79.0 204 58.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 9.0e-13 78.6 114 45.6
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.5e-12 77.8 160 67.5
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.5e-12 77.8 207 58.5
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 2.6e-12 77.0 294 42.9
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.4e-12 76.6 207 67.1
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 3.4e-12 76.6 207 64.7
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 5.8e-12 75.9 182 36.3
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.8e-12 75.9 166 57.8
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 5.8e-12 75.9 204 57.4
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.8e-12 75.9 164 65.2
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.8e-12 75.9 164 63.4
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 5.8e-12 75.9 167 65.9
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 5.8e-12 75.9 164 61.0
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 7.6e-12 75.5 96 63.5
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 7.6e-12 75.5 205 67.3
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.6e-12 75.5 205 67.3
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 9.9e-12 75.1 115 54.8
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 9.9e-12 75.1 184 64.1
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 9.9e-12 75.1 120 57.5
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.2e-11 73.9 118 47.5
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.2e-11 73.9 118 47.5
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.2e-11 73.9 197 67.0
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 2.2e-11 73.9 157 65.6
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.9e-11 73.6 214 62.1
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.9e-11 73.6 195 57.9
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.8e-11 73.2 129 80.6
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.8e-11 73.2 163 61.3
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.8e-11 73.2 77 76.6
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 6.4e-11 72.4 158 58.2
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 8.4e-11 72.0 133 42.1
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 1.1e-10 71.6 182 62.1
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 1.4e-10 71.2 172 63.4
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.4e-10 71.2 195 42.1
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.2e-10 70.1 105 60.0
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 7.1e-10 68.9 194 62.4
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.3e-10 68.6 205 65.9
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 9.3e-10 68.6 231 53.7
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.2e-09 68.2 120 52.5
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.2e-09 68.2 200 58.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 3.5e-09 66.6 162 66.0
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 4.6e-09 66.2 204 59.8
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 4.6e-09 66.2 158 66.5
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 6.0e-09 65.9 165 56.4
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.9e-09 65.5 192 55.7
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 7.9e-09 65.5 87 51.7
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 1.8e-08 64.3 124 62.9
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.3e-08 63.9 120 50.8
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 3.0e-08 63.5 179 66.5
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 3.9e-08 63.2 214 55.6
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 3.9e-08 63.2 49 71.4
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 5.1e-08 62.8 203 60.1
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.7e-08 62.4 94 45.7
MSTRG.5229 Avicennia marina HOM05D003347 ORTHO05D003821 1.1e-07 61.6 198 62.6
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.1e-07 61.6 207 56.5
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.1e-07 61.6 78 65.4
SalBow5G2549 Salvia bowleyana HOM05D003347 ORTHO05D003821 1.1e-07 61.6 106 54.7
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.5e-07 61.2 70 57.1
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 1.9e-07 60.8 162 63.0
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 3.3e-07 60.1 206 65.0
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 3.3e-07 60.1 77 50.6
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 3.3e-07 60.1 179 60.3
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 4.3e-07 59.7 120 46.7
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.3e-07 59.7 116 65.5
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 4.3e-07 59.7 130 46.2
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 5.6e-07 59.3 116 41.4
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.6e-07 59.3 73 68.5
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 5.6e-07 59.3 174 65.5
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 7.4e-07 58.9 47 72.3
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 7.4e-07 58.9 70 54.3
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 9.6e-07 58.5 72 48.6
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 9.6e-07 58.5 74 48.6
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 2.1e-06 57.4 134 57.5
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 2.1e-06 57.4 112 45.5
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 6.2e-06 55.8 44 68.2
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 6.2e-06 55.8 197 63.5
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 6.2e-06 55.8 101 56.4
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.1e-06 55.5 68 51.5


User provided reference genes

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