Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 2.9e-127 458.8 267 100.0
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.6e-48 197.2 150 64.7
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.7e-48 196.4 150 63.3
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 2.4e-44 183.3 207 48.8
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.6e-43 179.9 170 54.1
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 7.7e-43 178.3 171 52.6
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 2.2e-42 176.8 171 52.0
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.5e-41 173.3 196 48.5
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 9.4e-41 171.4 171 50.3
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 2.3e-39 166.8 196 45.9
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 6.7e-39 165.2 199 46.7
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.5e-38 164.1 159 52.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 4.3e-38 162.5 143 55.2
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 7.4e-38 161.8 206 46.1
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.3e-37 161.0 203 47.8
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.7e-37 160.6 206 49.0
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.4e-36 156.8 140 51.4
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 2.4e-36 156.8 148 56.1
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 5.3e-36 155.6 197 44.2
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.2e-35 154.5 144 50.7
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.5e-35 154.1 205 44.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.5e-35 154.1 209 43.5
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.7e-35 151.8 140 51.4
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.3e-34 151.0 139 54.7
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-34 151.0 135 51.1
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.7e-34 150.6 150 45.3
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 3.8e-34 149.4 143 52.4
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.4e-33 147.5 145 51.0
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.4e-33 147.5 145 51.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 1.9e-33 147.1 138 52.2
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.9e-33 147.1 149 51.7
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 3.2e-33 146.4 145 50.3
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 9.4e-33 144.8 202 40.1
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.2e-32 144.4 135 51.1
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 1.6e-32 144.1 190 44.2
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.6e-32 142.9 135 51.1
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.4e-31 141.0 200 40.5
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 3.0e-31 139.8 136 50.0
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 3.0e-31 139.8 202 41.1
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 5.7e-30 135.6 148 50.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 9.7e-30 134.8 143 46.9
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 2.2e-29 133.7 175 44.0
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 2.8e-29 133.3 141 49.6
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 1.8e-28 130.6 194 39.2
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 3.1e-28 129.8 135 45.9
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.1e-28 129.4 204 37.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 5.3e-28 129.0 141 49.6
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 9.1e-28 128.3 145 51.7
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.2e-27 127.9 141 50.4
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.2e-27 127.9 141 50.4
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.2e-27 127.9 139 50.4
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.6e-27 127.5 141 49.6
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-27 127.1 141 49.6
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 2.6e-27 126.7 154 40.9
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.6e-27 126.7 143 49.0
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 4.5e-27 125.9 120 50.8
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.5e-27 125.9 141 44.7
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 5.9e-27 125.6 138 50.0
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 7.7e-27 125.2 153 41.8
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.0e-26 124.8 146 47.9
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.3e-26 124.4 138 50.0
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.7e-26 124.0 139 48.9
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.7e-26 124.0 151 45.7
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 2.9e-26 123.2 143 48.3
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 5.0e-26 122.5 143 46.2
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 5.0e-26 122.5 138 49.3
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.1e-25 121.3 141 44.0
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.9e-25 120.6 138 48.6
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 4.2e-25 119.4 146 46.6
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 4.2e-25 119.4 141 43.3
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 5.5e-25 119.0 134 45.5
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 5.5e-25 119.0 138 47.1
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 5.5e-25 119.0 208 39.4
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 5.5e-25 119.0 147 45.6
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 9.4e-25 118.2 178 42.1
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 2.7e-24 116.7 177 41.2
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 4.7e-24 115.9 89 60.7
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.0e-23 114.8 134 41.0
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.0e-23 114.8 198 36.4
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.8e-23 114.0 167 44.9
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 2.3e-23 113.6 179 38.5
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 2.3e-23 113.6 144 46.5
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.0e-23 113.2 170 45.3
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 5.2e-23 112.5 141 43.3
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 9.7e-22 108.2 120 45.0
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.3e-21 107.8 134 41.0
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 9.1e-20 101.7 136 39.0
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.0e-19 100.5 170 45.3
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 6.5e-18 95.5 97 51.5
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 1.9e-17 94.0 98 48.0
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.9e-17 94.0 87 52.9
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 9.4e-17 91.7 94 51.1
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 9.4e-17 91.7 90 48.9
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.6e-16 90.9 175 33.1
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 2.1e-16 90.5 135 37.8
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.6e-16 89.7 94 51.1
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 3.0e-15 86.7 138 36.2
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.2e-15 85.9 134 38.8
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.5e-14 84.3 138 37.7
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.5e-14 84.3 138 37.0
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.6e-14 83.6 138 38.4
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.6e-14 83.6 138 37.7
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 5.7e-14 82.4 141 36.2
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 5.7e-14 82.4 141 36.2
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 2.8e-13 80.1 140 37.1
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 3.7e-13 79.7 134 36.6
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 3.7e-13 79.7 134 36.6
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 4.8e-13 79.3 145 36.6
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 8.3e-13 78.6 137 38.0
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 3.1e-12 76.6 72 52.8
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 4.1e-12 76.3 139 31.7
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 5.4e-12 75.9 137 36.5
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.7e-11 73.6 176 30.1
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 5.9e-11 72.4 134 35.1
SGA_v2.0_scaffold346G49537 Striga asiatica HOM05D005423 ORTHO05D006223 5.9e-11 72.4 52 71.2
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 5.0e-10 69.3 59 61.0
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 6.5e-10 68.9 59 59.3
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 8.5e-10 68.6 74 48.6
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.9e-09 67.4 166 26.5
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 2.5e-09 67.0 140 30.0
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 3.2e-09 66.6 136 33.8
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 3.2e-09 66.6 117 35.9
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.2e-09 66.6 173 25.4
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 5.5e-09 65.9 133 36.8
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 9.4e-09 65.1 96 37.5
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.4e-09 65.1 72 51.4
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 2.1e-08 63.9 72 38.9
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.7e-08 63.5 70 51.4
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.7e-08 63.5 70 51.4
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 3.6e-08 63.2 119 31.9
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 6.1e-08 62.4 102 35.3
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 8.0e-08 62.0 75 40.0
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 8.0e-08 62.0 147 31.3
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 1.4e-07 61.2 121 38.0
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-07 60.8 52 59.6
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 1.8e-07 60.8 69 33.3
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 3.0e-07 60.1 98 34.7
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 4.0e-07 59.7 98 34.7
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 5.2e-07 59.3 148 30.4
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.2e-07 59.3 135 31.1
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 8.8e-07 58.5 144 32.6
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 8.8e-07 58.5 93 33.3
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 8.8e-07 58.5 118 35.6
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 8.8e-07 58.5 118 35.6
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 8.8e-07 58.5 95 35.8
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.8e-07 58.5 66 51.5
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 8.8e-07 58.5 139 23.7
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 8.8e-07 58.5 116 33.6
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-06 58.2 112 31.2
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 1.2e-06 58.2 99 34.3
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.5e-06 57.8 93 33.3
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 1.5e-06 57.8 91 33.0
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.5e-06 57.8 147 29.9
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 1.5e-06 57.8 132 28.8
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.5e-06 57.8 83 41.0
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 2.0e-06 57.4 131 32.1
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.0e-06 57.4 126 34.1
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 2.0e-06 57.4 85 40.0
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 2.0e-06 57.4 96 32.3
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 2.0e-06 57.4 143 26.6
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.0e-06 57.4 141 29.1
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 2.6e-06 57.0 76 36.8
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.6e-06 57.0 69 44.9
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 2.6e-06 57.0 103 32.0
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.6e-06 57.0 139 28.8
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 2.6e-06 57.0 109 36.7
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.6e-06 57.0 166 21.7
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 3.4e-06 56.6 85 40.0
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 3.4e-06 56.6 108 34.3
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 3.4e-06 56.6 140 28.6
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 3.4e-06 56.6 140 29.3
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 4.4e-06 56.2 101 31.7
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 4.4e-06 56.2 92 33.7
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 5.7e-06 55.8 70 44.3
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 5.7e-06 55.8 103 32.0
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 5.7e-06 55.8 125 30.4
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 7.5e-06 55.5 102 32.4
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 7.5e-06 55.5 85 40.0
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 7.5e-06 55.5 85 40.0
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 7.5e-06 55.5 71 43.7
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 9.8e-06 55.1 85 38.8
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 9.8e-06 55.1 82 37.8
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 9.8e-06 55.1 90 33.3
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 9.8e-06 55.1 131 29.8
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 9.8e-06 55.1 80 32.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 9.8e-06 55.1 96 33.3


User provided reference genes

Program Settings