Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 4.5e-231 804.3 420 100.0
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.7e-84 317.4 423 50.6
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.9e-52 210.3 488 39.5
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 7.0e-51 205.7 462 40.0
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 7.3e-48 195.7 491 38.5
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 4.0e-46 189.9 476 35.3
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 2.0e-37 161.0 451 34.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.3e-28 131.7 333 36.3
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 2.9e-28 130.6 462 32.5
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 3.2e-27 127.1 277 37.5
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 4.2e-27 126.7 437 32.3
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 5.4e-27 126.3 458 29.9
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 7.1e-27 125.9 417 29.0
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.0e-25 120.6 203 44.3
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 3.9e-25 120.2 490 29.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 3.9e-25 120.2 479 29.9
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 8.7e-25 119.0 455 31.4
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 3.3e-24 117.1 465 30.1
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.3e-24 117.1 244 38.5
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 5.6e-24 116.3 429 29.6
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 5.6e-24 116.3 418 33.0
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 9.6e-24 115.5 515 27.6
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.1e-23 114.4 510 30.0
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.1e-23 114.4 464 31.2
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 4.8e-23 113.2 438 30.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.8e-22 111.3 423 31.7
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 3.1e-22 110.5 458 30.1
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 6.9e-22 109.4 465 29.0
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 9.0e-22 109.0 427 30.9
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.4e-21 107.1 422 31.3
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 3.4e-21 107.1 425 31.1
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 4.5e-21 106.7 429 29.1
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 4.5e-21 106.7 429 29.1
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 4.5e-21 106.7 465 29.7
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 7.6e-21 105.9 425 31.1
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 3.8e-20 103.6 427 30.9
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 4.9e-20 103.2 426 30.5
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 6.4e-20 102.8 442 30.8
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.1e-19 102.1 458 29.5
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.4e-19 101.7 451 31.9
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.9e-19 101.3 446 28.9
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.2e-19 100.5 457 28.2
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.6e-18 98.2 411 29.9
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.1e-18 97.8 433 30.7
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-18 97.8 433 30.7
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.1e-18 97.8 443 27.5
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.7e-18 97.4 460 28.5
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 4.6e-18 96.7 342 31.9
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 4.6e-18 96.7 452 28.8
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 6.0e-18 96.3 196 38.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 6.0e-18 96.3 416 28.8
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 6.0e-18 96.3 419 31.0
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 7.9e-18 95.9 425 29.2
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.0e-17 95.5 428 27.6
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.0e-17 95.5 435 29.7
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.0e-17 95.5 220 35.5
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.3e-17 95.1 494 25.7
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-17 94.7 419 31.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.8e-17 94.7 436 29.8
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 3.9e-17 93.6 419 29.8
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 8.7e-17 92.4 437 28.1
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-16 92.0 418 30.6
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.5e-16 91.7 452 28.8
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.9e-16 91.3 461 30.8
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.5e-16 90.9 432 28.2
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.3e-16 90.5 449 29.2
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 4.3e-16 90.1 444 29.5
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 4.3e-16 90.1 422 28.4
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 4.3e-16 90.1 458 28.6
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 5.6e-16 89.7 424 28.3
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 7.4e-16 89.4 346 30.3
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 7.4e-16 89.4 428 29.2
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 9.6e-16 89.0 461 29.5
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 9.6e-16 89.0 494 28.7
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.3e-15 88.6 439 29.2
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.6e-15 88.2 202 36.6
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-15 88.2 438 29.0
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 6.2e-15 86.3 425 29.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 6.2e-15 86.3 418 29.2
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 6.2e-15 86.3 357 30.8
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.4e-14 85.1 461 28.9
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.8e-14 84.7 420 29.0
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.8e-14 84.7 206 35.4
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.1e-14 84.0 168 38.7
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 3.1e-14 84.0 364 27.2
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 4.0e-14 83.6 435 29.9
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 4.0e-14 83.6 206 35.9
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 4.0e-14 83.6 444 29.1
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.9e-14 82.8 460 27.0
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 6.9e-14 82.8 452 28.5
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 6.9e-14 82.8 503 27.2
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 9.0e-14 82.4 417 29.3
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 9.0e-14 82.4 417 29.3
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 9.0e-14 82.4 464 26.9
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 1.2e-13 82.0 454 26.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 1.5e-13 81.6 458 29.9
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 2.0e-13 81.3 458 29.9
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.4e-13 80.5 465 26.9
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 4.5e-13 80.1 457 28.2
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 9.9e-13 79.0 173 37.0
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 9.9e-13 79.0 349 29.5
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.3e-12 78.6 440 27.7
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.7e-12 78.2 460 29.8
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-12 78.2 433 27.3
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.9e-12 77.4 407 28.3
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 6.4e-12 76.3 407 28.0
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 6.4e-12 76.3 183 34.4
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 8.4e-12 75.9 407 28.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 8.4e-12 75.9 407 28.0
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 5.5e-11 73.2 347 29.1
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 7.1e-11 72.8 447 28.0
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 9.3e-11 72.4 459 28.3
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 9.3e-11 72.4 155 38.7
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.2e-10 72.0 425 26.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.6e-10 71.6 336 28.6
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 2.1e-10 71.2 411 28.2
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 2.7e-10 70.9 189 34.9
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.5e-10 70.5 199 34.7
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 4.6e-10 70.1 402 28.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 4.6e-10 70.1 191 35.6
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.6e-10 70.1 189 34.9
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-10 69.7 171 37.4
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-09 68.9 194 34.0
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.0e-09 68.9 191 33.0
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.0e-09 68.9 61 52.5
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.3e-09 68.6 189 34.4
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 2.3e-09 67.8 188 34.6
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.3e-09 67.8 420 26.2
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 3.0e-09 67.4 191 32.5
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 3.0e-09 67.4 191 32.5
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 3.9e-09 67.0 188 32.4
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 5.1e-09 66.6 200 32.5
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 6.7e-09 66.2 412 28.2
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 8.7e-09 65.9 197 29.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 8.7e-09 65.9 202 35.6
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.1e-08 65.5 411 26.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.5e-08 65.1 474 26.2
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.5e-08 65.1 422 27.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-08 64.7 199 31.2
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.5e-08 64.3 66 53.0
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 3.3e-08 63.9 188 33.5
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 2.1e-07 61.2 189 32.8
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 3.7e-07 60.5 277 29.2
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 3.7e-07 60.5 188 31.9
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 4.8e-07 60.1 62 54.8
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 6.2e-07 59.7 61 54.1
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 8.2e-07 59.3 410 26.6
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 2.4e-06 57.8 433 24.5
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 4.0e-06 57.0 435 25.1


User provided reference genes

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