Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 8.2e-43 177.2 129 100.0
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 3.5e-17 92.0 95 58.9
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 5.6e-15 84.7 47 87.2
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 5.6e-15 84.7 47 85.1
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 5.6e-15 84.7 66 65.2
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 1.2e-14 83.6 64 65.6
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 1.2e-14 83.6 46 89.1
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 1.2e-14 83.6 46 89.1
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 1.2e-14 83.6 71 59.2
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 1.2e-14 83.6 46 89.1
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 1.2e-14 83.6 47 85.1
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 1.2e-14 83.6 47 85.1
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 1.2e-14 83.6 47 85.1
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 1.6e-14 83.2 47 83.0
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.6e-14 83.2 47 83.0
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.6e-14 83.2 47 83.0
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 2.1e-14 82.8 47 85.1
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 2.1e-14 82.8 64 64.1
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 2.8e-14 82.4 46 84.8
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 2.8e-14 82.4 47 83.0
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 2.8e-14 82.4 46 87.0
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 2.8e-14 82.4 46 87.0
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 2.8e-14 82.4 44 88.6
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 2.8e-14 82.4 46 82.6
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 3.6e-14 82.0 47 83.0
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 3.6e-14 82.0 46 84.8
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 3.6e-14 82.0 46 84.8
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 3.6e-14 82.0 47 83.0
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 3.6e-14 82.0 44 86.4
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 4.7e-14 81.6 64 64.1
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 6.2e-14 81.3 68 64.7
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 6.2e-14 81.3 47 85.1
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 6.2e-14 81.3 47 83.0
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 6.2e-14 81.3 47 85.1
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 6.2e-14 81.3 47 83.0
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 6.2e-14 81.3 47 85.1
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 6.2e-14 81.3 47 83.0
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 8.0e-14 80.9 64 62.5
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 8.0e-14 80.9 46 82.6
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 8.0e-14 80.9 69 62.3
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 8.0e-14 80.9 69 62.3
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 1.1e-13 80.5 43 86.0
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 1.8e-13 79.7 64 68.8
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 1.8e-13 79.7 43 88.4
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 1.8e-13 79.7 44 81.8
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 2.3e-13 79.3 47 78.7
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 2.3e-13 79.3 46 80.4
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 3.1e-13 79.0 43 86.0
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 3.1e-13 79.0 63 66.7
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 3.1e-13 79.0 65 61.5
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 4.0e-13 78.6 44 81.8
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 4.0e-13 78.6 46 78.3
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 4.0e-13 78.6 43 86.0
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 5.2e-13 78.2 46 78.3
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 5.2e-13 78.2 46 80.4
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 5.2e-13 78.2 62 66.1
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 5.2e-13 78.2 64 62.5
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 5.2e-13 78.2 47 76.6
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 5.2e-13 78.2 67 62.7
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 6.8e-13 77.8 65 61.5
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 6.8e-13 77.8 47 74.5
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 6.8e-13 77.8 47 74.5
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 6.8e-13 77.8 43 83.7
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 8.9e-13 77.4 71 56.3
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 8.9e-13 77.4 47 80.9
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 8.9e-13 77.4 43 83.7
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 8.9e-13 77.4 43 81.4
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 8.9e-13 77.4 44 79.5
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 1.2e-12 77.0 65 58.5
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 1.2e-12 77.0 65 58.5
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 1.5e-12 76.6 44 79.5
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 1.5e-12 76.6 72 58.3
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 1.5e-12 76.6 46 80.4
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 2.0e-12 76.3 65 60.0
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 2.0e-12 76.3 65 58.5
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 2.6e-12 75.9 65 56.9
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 2.6e-12 75.9 43 81.4
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 2.6e-12 75.9 65 56.9
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 2.6e-12 75.9 46 76.1
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 2.6e-12 75.9 46 76.1
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 4.4e-12 75.1 43 81.4
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 4.4e-12 75.1 44 77.3
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 5.8e-12 74.7 43 81.4
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 7.5e-12 74.3 43 83.7
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 7.5e-12 74.3 44 75.0
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 7.5e-12 74.3 43 79.1
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 7.5e-12 74.3 43 81.4
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 7.5e-12 74.3 43 79.1
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 9.8e-12 73.9 64 59.4
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 9.8e-12 73.9 43 76.7
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 9.8e-12 73.9 72 55.6
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 1.3e-11 73.6 62 62.9
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 1.3e-11 73.6 44 77.3
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 1.3e-11 73.6 44 77.3
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 1.7e-11 73.2 40 80.0
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 1.7e-11 73.2 40 80.0
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 1.1e-10 70.5 42 78.6
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 1.1e-10 70.5 65 56.9
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 1.9e-10 69.7 41 82.9
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 3.2e-10 68.9 46 69.6
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 3.2e-10 68.9 42 76.2
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 5.4e-10 68.2 41 78.0
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 7.0e-10 67.8 40 77.5
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 2.0e-09 66.2 38 78.9
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 6.0e-09 64.7 43 74.4
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 3.3e-07 58.9 35 77.1
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 3.3e-07 58.9 32 84.4
FAN12G1070 Fragaria x ananassa HOM05D007178 ORTHO05D009022 4.3e-07 58.5 31 83.9
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 9.5e-07 57.4 43 58.1


User provided reference genes

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