Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 8.7e-61 236.9 128 100.0
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 3.4e-57 224.9 128 94.5
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 1.3e-56 223.0 141 88.7
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 2.2e-56 222.2 128 93.8
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 4.9e-56 221.1 128 91.4
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 1.9e-55 219.2 127 92.1
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 7.1e-55 217.2 128 90.6
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 7.1e-55 217.2 128 90.6
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 9.3e-55 216.9 126 91.3
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 9.3e-55 216.9 127 91.3
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 4.6e-54 214.5 127 92.1
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 4.6e-54 214.5 127 89.8
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 4.6e-54 214.5 127 89.8
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.9e-54 213.8 126 91.3
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 7.9e-54 213.8 126 91.3
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.0e-53 213.4 127 89.8
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 1.0e-53 213.4 125 90.4
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 1.0e-53 213.4 125 89.6
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.3e-53 213.0 127 89.0
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 1.3e-53 213.0 125 89.6
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.8e-53 212.6 126 90.5
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 2.3e-53 212.2 125 89.6
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 3.0e-53 211.8 128 86.7
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 3.9e-53 211.5 127 88.2
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.9e-53 211.5 126 91.3
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 3.9e-53 211.5 125 88.8
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 5.1e-53 211.1 127 88.2
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 5.1e-53 211.1 127 87.4
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 6.7e-53 210.7 127 88.2
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.7e-53 210.7 127 89.0
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 6.7e-53 210.7 126 90.5
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 6.7e-53 210.7 126 88.9
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 6.7e-53 210.7 127 87.4
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.1e-52 209.9 126 89.7
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 1.1e-52 209.9 127 89.0
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 1.5e-52 209.5 127 86.6
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.9e-52 209.1 127 88.2
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 2.5e-52 208.8 127 90.6
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.5e-52 208.8 125 87.2
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 3.3e-52 208.4 125 88.0
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 4.3e-52 208.0 127 88.2
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 4.3e-52 208.0 125 88.0
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 5.7e-52 207.6 127 86.6
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 5.7e-52 207.6 127 85.8
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 5.7e-52 207.6 125 87.2
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.3e-51 206.5 125 87.2
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 1.3e-51 206.5 126 86.5
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 1.3e-51 206.5 127 86.6
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 1.6e-51 206.1 125 86.4
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 2.1e-51 205.7 127 85.0
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 3.7e-51 204.9 125 85.6
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 3.7e-51 204.9 127 86.6
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 3.7e-51 204.9 127 85.0
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.8e-51 204.5 126 88.9
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 4.8e-51 204.5 127 86.6
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 6.2e-51 204.1 126 88.1
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 8.2e-51 203.8 126 84.1
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.1e-50 203.4 127 85.0
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.4e-50 203.0 127 85.8
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 2.4e-50 202.2 126 83.3
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 4.1e-50 201.4 124 88.7
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 4.1e-50 201.4 126 84.9
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 5.3e-50 201.1 127 81.9
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 5.3e-50 201.1 126 84.1
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 1.2e-49 199.9 135 80.0
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.7e-48 196.1 144 77.1
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 2.2e-48 195.7 126 82.5
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 3.8e-48 194.9 126 79.4
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 5.0e-48 194.5 126 81.0
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 5.0e-48 194.5 126 81.0
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 8.4e-48 193.7 125 80.8
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 1.4e-47 193.0 126 80.2
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 1.4e-47 193.0 126 80.2
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 1.4e-47 193.0 126 80.2
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.4e-47 193.0 125 80.8
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 5.5e-47 191.0 126 79.4
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 5.5e-47 191.0 126 79.4
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 1.2e-46 189.9 127 80.3
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 1.6e-46 189.5 108 90.7
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.7e-46 188.7 117 88.9
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 4.6e-46 188.0 110 87.3
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 6.1e-46 187.6 106 93.4
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.0e-45 186.8 108 91.7
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.3e-45 186.4 110 87.3
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.3e-45 185.7 117 87.2
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 3.9e-45 184.9 120 78.3
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 6.7e-45 184.1 126 79.4
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 8.7e-45 183.7 107 91.6
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 2.5e-44 182.2 182 60.4
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 5.7e-44 181.0 105 89.5
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 5.7e-44 181.0 108 87.0
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 7.4e-44 180.6 126 74.6
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 1.3e-43 179.9 130 76.9
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.3e-43 179.9 107 86.9
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 4.8e-43 177.9 104 91.3
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 8.2e-43 177.2 105 89.5
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 8.2e-43 177.2 121 81.8
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 1.4e-42 176.4 105 87.6
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 1.8e-42 176.0 108 85.2
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 5.3e-42 174.5 105 87.6
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 5.3e-42 174.5 105 88.6
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.5e-41 172.9 116 79.3
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 2.0e-41 172.6 123 78.9
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 4.5e-41 171.4 104 84.6
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 1.7e-40 169.5 108 81.5
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 2.9e-40 168.7 108 81.5
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 2.5e-39 165.6 115 77.4
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 9.4e-39 163.7 157 61.8
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 2.1e-38 162.5 123 66.7
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 4.6e-38 161.4 125 68.0
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 4.6e-38 161.4 88 96.6
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 1.4e-37 159.8 88 95.5
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 1.8e-37 159.5 127 64.6
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 2.3e-37 159.1 87 94.3
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 3.0e-37 158.7 88 93.2
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 6.7e-37 157.5 87 94.3
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 6.7e-37 157.5 120 70.8
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 2.5e-36 155.6 128 68.8
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 2.5e-36 155.6 109 72.5
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 3.3e-36 155.2 115 73.9
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 3.3e-36 155.2 88 90.9
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 2.8e-35 152.1 88 87.5
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 1.1e-34 150.2 84 90.5
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 9.1e-34 147.1 88 87.5
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 2.0e-33 146.0 132 65.2
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 2.6e-33 145.6 86 87.2
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.6e-33 145.6 87 88.5
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 3.4e-33 145.2 89 84.3
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 5.9e-33 144.4 88 87.5
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 1.0e-32 143.7 103 78.6
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.4e-31 139.8 95 83.2
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 9.4e-31 137.1 126 65.9
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 2.3e-29 132.5 87 78.2
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 7.4e-28 127.5 71 93.0
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 5.3e-26 121.3 65 95.4
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 5.3e-26 121.3 65 95.4
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 2.6e-25 119.0 77 83.1
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 3.5e-25 118.6 88 73.9
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 8.5e-24 114.0 63 92.1
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 9.4e-23 110.5 61 93.4
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 4.4e-20 101.7 120 46.7
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 2.2e-19 99.4 120 42.5
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 3.7e-19 98.6 67 73.1
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 4.8e-19 98.2 106 57.5
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 4.8e-19 98.2 64 76.6
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.4e-18 96.7 64 75.0
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 2.4e-18 95.9 64 75.0
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 3.1e-18 95.5 78 64.1
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 2.0e-17 92.8 65 73.8
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 2.2e-16 89.4 65 70.8
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 1.2e-14 83.6 51 86.3
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 6.1e-14 81.3 118 35.6
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 4.8e-11 71.6 120 34.2
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 7.0e-10 67.8 121 38.0
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 5.0e-08 61.6 51 64.7


User provided reference genes

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