Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 4.2e-195 684.5 341 100.0
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.3e-111 407.1 318 69.8
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 5.1e-100 368.6 355 59.4
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.4e-94 350.5 355 57.2
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 7.4e-91 338.2 337 57.9
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.6e-90 337.0 449 46.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.1e-89 334.3 425 47.8
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 4.1e-89 332.4 354 54.0
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 5.3e-89 332.0 354 55.4
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.0e-88 330.1 354 55.4
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 4.5e-88 328.9 354 54.8
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 7.2e-86 321.6 346 53.2
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.7e-85 319.7 357 52.4
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 3.6e-85 319.3 355 53.5
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 2.3e-84 316.6 363 54.0
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.5e-83 313.9 359 51.3
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 4.3e-83 312.4 357 51.0
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 2.4e-81 306.6 265 61.5
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.5e-80 303.9 356 50.0
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 7.7e-80 301.6 356 51.4
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.0e-79 301.2 289 58.5
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.0e-79 301.2 304 57.6
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.7e-79 300.4 348 51.4
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 2.2e-79 300.1 359 51.0
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 1.9e-78 297.0 356 50.8
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 4.2e-78 295.8 352 49.1
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 7.2e-78 295.0 351 48.1
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 1.2e-77 294.3 349 48.1
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.2e-77 294.3 359 51.0
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 2.3e-76 290.0 353 49.3
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.9e-76 289.3 361 49.9
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.6e-75 286.6 347 51.0
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.6e-75 286.6 347 51.0
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 3.3e-75 286.2 346 48.3
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 7.4e-75 285.0 346 46.2
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 9.7e-75 284.6 347 51.0
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 9.7e-75 284.6 356 48.6
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 6.3e-74 282.0 356 44.9
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 6.3e-74 282.0 355 50.7
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 8.2e-74 281.6 346 47.1
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.1e-73 281.2 351 47.6
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 2.4e-73 280.0 359 46.5
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 2.4e-73 280.0 347 47.0
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 4.1e-73 279.3 346 45.7
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 9.1e-73 278.1 289 53.3
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.7e-71 273.9 351 45.9
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.8e-71 272.7 343 49.0
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 4.2e-70 269.2 357 48.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 4.2e-70 269.2 305 51.5
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 7.2e-70 268.5 350 45.1
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 3.6e-69 266.2 325 50.5
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.0e-68 264.6 348 45.1
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.0e-68 263.1 342 48.2
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.9e-68 262.7 387 44.4
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.5e-67 260.8 355 45.1
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 2.0e-67 260.4 346 46.0
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 2.6e-67 260.0 355 44.8
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 4.4e-67 259.2 287 49.8
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.8e-66 256.5 324 49.7
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.7e-66 256.1 356 42.1
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 6.3e-66 255.4 349 44.1
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.1e-65 254.6 341 46.3
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.4e-65 254.2 335 43.9
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 1.4e-65 254.2 355 45.6
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 5.3e-65 252.3 348 43.7
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 7.0e-65 251.9 343 44.6
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.6e-64 250.8 396 42.7
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 2.6e-64 250.0 339 47.2
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 4.5e-64 249.2 290 48.3
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 7.7e-64 248.4 404 43.3
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 5.0e-63 245.7 267 54.3
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 5.0e-63 245.7 350 43.1
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 1.1e-62 244.6 337 42.7
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 3.2e-62 243.0 286 52.4
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 4.2e-62 242.7 359 41.8
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 9.4e-62 241.5 346 41.3
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.2e-61 241.1 371 40.7
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.7e-61 239.2 353 40.8
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 5.2e-60 235.7 333 42.9
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 5.7e-59 232.3 353 41.6
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.3e-58 231.1 352 42.0
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.7e-58 230.7 399 40.1
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.2e-58 230.3 356 41.3
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.2e-58 230.3 349 42.7
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 4.8e-58 229.2 356 40.7
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 8.2e-58 228.4 351 41.0
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.8e-57 227.3 293 48.5
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 2.4e-57 226.9 353 40.5
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 7.0e-57 225.3 349 41.0
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.0e-56 223.8 352 40.6
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.7e-56 223.4 298 47.7
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 3.5e-56 223.0 340 41.8
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.0e-55 221.5 354 41.8
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.3e-55 221.1 347 40.1
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.3e-55 221.1 346 39.9
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 1.7e-55 220.7 348 42.2
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 5.0e-55 219.2 304 43.8
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 2.5e-54 216.9 344 41.0
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.7e-53 213.4 349 37.2
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.0e-52 211.5 260 51.5
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 5.2e-52 209.1 357 41.5
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 6.3e-50 202.2 249 50.6
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.8e-49 200.7 300 40.3
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.6e-48 197.6 330 38.2
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.0e-48 197.2 358 35.8
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 7.7e-48 195.3 251 47.4
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.0e-47 194.9 278 43.2
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 5.0e-47 192.6 349 36.4
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.5e-47 192.2 175 60.6
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 1.5e-46 191.0 352 35.8
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 5.5e-46 189.1 358 34.9
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-45 188.0 355 36.9
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.1e-45 187.2 355 34.9
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 6.1e-45 185.7 351 38.5
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.3e-44 183.7 358 34.4
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.3e-44 183.7 349 35.0
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 2.3e-44 183.7 359 34.8
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 2.3e-44 183.7 352 35.2
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 5.2e-44 182.6 350 35.4
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 5.2e-44 182.6 364 37.1
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 6.8e-44 182.2 380 33.9
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 8.8e-44 181.8 358 34.1
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 8.8e-44 181.8 358 34.1
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.2e-43 181.4 349 34.7
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 4.4e-43 179.5 263 44.5
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.7e-42 177.6 350 35.4
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.8e-42 176.8 259 42.1
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.1e-41 174.9 333 35.7
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 2.4e-41 173.7 292 37.0
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.0e-40 170.6 250 40.8
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.7e-40 170.2 276 40.6
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.9e-40 169.1 319 37.0
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.3e-39 167.2 305 37.4
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.9e-38 164.1 360 33.9
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 5.6e-38 162.5 150 58.7
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 9.5e-38 161.8 154 63.0
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.4e-36 157.9 405 31.1
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.2e-35 154.8 147 57.8
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.5e-35 154.5 106 70.8
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.8e-35 151.8 172 55.2
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 1.7e-34 151.0 143 57.3
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.7e-34 149.8 308 33.8
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 4.1e-33 146.4 135 57.8
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.2e-32 144.8 157 47.8
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 7.8e-32 142.1 186 46.8
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.3e-31 141.4 273 39.9
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 1.5e-30 137.9 139 54.0
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 4.3e-30 136.3 152 50.0
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.5e-30 135.2 231 38.1
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.6e-29 133.3 110 62.7
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.8e-28 131.0 102 67.6
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.2e-27 128.3 324 34.6
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 1.5e-27 127.9 123 54.5
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 4.6e-24 116.3 105 53.3
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.1e-20 105.1 110 50.0
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.1e-20 103.6 102 57.8
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.4e-17 94.7 72 66.7
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.9e-17 94.4 124 44.4
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 7.1e-17 92.4 272 28.7
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.3e-15 87.4 222 31.5
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.5e-14 84.7 76 60.5
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.8e-12 77.8 47 74.5
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 5.2e-12 76.3 45 77.8
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.2e-11 75.1 91 49.5
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 8.6e-07 58.9 49 63.3
FAN13G3149 Fragaria x ananassa HOM05D001129 ORTHO05D025614 5.6e-06 56.2 113 34.5
FAN02G3483 Fragaria x ananassa HOM05D004223 ORTHO05D025614 9.6e-06 55.5 75 37.3


User provided reference genes

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