Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 0.0e+00 2013.0 1053 100.0
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 0.0e+00 1181.4 948 68.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.0e-235 820.1 1077 48.9
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 4.2e-193 679.5 1098 42.8
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.8e-133 480.7 899 39.9
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 3.3e-121 440.7 1133 33.0
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 2.3e-119 434.5 1153 31.6
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 4.4e-110 403.7 1119 32.1
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 4.9e-109 400.2 1149 32.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.1e-108 399.1 1064 32.8
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 7.3e-105 386.3 1026 33.4
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 2.8e-104 384.4 1185 31.9
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.2e-99 369.0 1180 31.7
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 2.1e-99 368.2 1081 30.8
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.5e-99 367.5 1180 28.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.9e-98 364.0 1162 29.2
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 8.6e-98 362.8 1102 30.4
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 8.6e-98 362.8 1185 31.5
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.5e-97 361.3 1180 29.0
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.6e-96 358.6 1111 29.9
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.6e-96 358.6 1180 28.8
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.6e-96 358.6 1127 29.8
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.1e-96 356.3 1152 29.3
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.4e-95 354.8 1111 30.9
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.2e-94 352.4 1199 29.4
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.1e-92 343.2 999 32.2
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.6e-91 342.0 1226 28.4
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 2.1e-91 341.7 1151 28.7
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.8e-91 339.7 1123 29.1
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.9e-89 335.1 1027 31.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 7.3e-89 333.2 1079 30.3
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.1e-88 331.6 1108 28.7
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 6.2e-88 330.1 1052 29.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 8.4e-85 319.7 1113 28.2
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 8.4e-85 319.7 1100 28.7
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.9e-84 318.5 1123 28.8
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 9.3e-84 316.2 1037 29.4
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.3e-82 312.4 867 31.6
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.1e-82 310.5 885 31.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.5e-81 308.9 1115 27.8
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.5e-81 308.1 1120 28.8
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 6.2e-80 303.5 1033 29.9
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 6.2e-80 303.5 891 30.5
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.8e-79 302.0 829 30.8
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.0e-79 300.8 1120 30.1
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 6.9e-79 300.1 1066 28.7
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.9e-79 300.1 702 33.6
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 9.0e-79 299.7 1131 29.7
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 4.9e-77 293.9 1100 28.9
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.9e-76 292.0 1047 29.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 7.1e-76 290.0 1167 27.7
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 7.9e-75 286.6 991 30.3
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.1e-71 276.2 796 30.5
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 3.1e-71 274.6 1129 28.1
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.0e-71 273.1 1002 28.9
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.5e-70 272.3 856 28.6
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.6e-70 271.6 1003 29.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 7.6e-70 270.0 901 29.9
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 3.2e-68 264.6 1143 26.0
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 1.0e-66 259.6 1096 25.4
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.3e-66 258.5 1005 28.6
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.9e-65 255.4 1086 26.6
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 1.9e-65 255.4 1080 25.0
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.1e-64 251.9 864 29.2
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 6.3e-64 250.4 1083 26.6
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 6.3e-64 250.4 1067 26.5
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.1e-63 249.6 1029 28.2
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 9.0e-63 246.5 1016 27.3
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 2.0e-62 245.4 1073 26.9
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.7e-61 242.3 1070 26.0
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.2e-61 241.9 1052 25.8
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.9e-61 241.5 1079 25.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.4e-60 239.2 927 28.0
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 7.9e-59 233.4 1069 27.0
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.8e-58 232.3 894 26.2
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 3.9e-58 231.1 1075 26.1
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 7.4e-57 226.9 1055 26.0
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 7.4e-57 226.9 1093 26.1
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.1e-55 223.0 1109 26.1
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.8e-55 222.2 1060 25.0
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 2.4e-55 221.9 1057 24.2
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 5.3e-55 220.7 1051 26.5
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 6.9e-55 220.3 1034 25.7
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.5e-54 219.2 1071 24.5
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 5.9e-54 217.2 1056 24.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.0e-53 216.5 752 27.7
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.7e-53 215.7 1084 25.6
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 9.4e-52 209.9 928 26.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.6e-51 209.1 1056 24.4
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 4.6e-51 207.6 968 27.1
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 7.9e-51 206.8 1056 24.3
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.8e-50 205.7 1051 25.2
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.8e-50 203.4 1010 25.0
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.1e-49 203.0 1030 24.8
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.3e-48 199.5 1074 24.5
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 9.1e-47 193.4 784 27.9
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.2e-45 188.7 1005 26.2
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-44 186.0 1058 24.7
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.4e-44 186.0 645 26.7
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.7e-43 181.8 485 29.7
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.3e-40 172.9 638 26.3
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 4.8e-40 171.0 863 25.5
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 8.2e-40 170.2 646 27.6
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.1e-39 169.9 1131 23.2
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.4e-39 169.5 506 29.4
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.6e-33 148.7 400 30.2
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.6e-33 148.7 400 30.2
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.3e-33 148.3 400 30.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.8e-31 142.5 170 45.3
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 9.4e-28 130.2 820 23.4
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.0e-26 126.7 294 31.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.8e-26 125.9 157 43.9
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 2.2e-24 119.0 808 23.3
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 4.8e-24 117.9 598 27.6
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 3.5e-22 111.7 293 29.7
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 5.9e-22 110.9 333 27.3
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 2.8e-19 102.1 293 29.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 4.7e-19 101.3 306 28.8
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 8.0e-19 100.5 306 29.1
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.8e-18 99.4 371 25.3
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.8e-18 99.4 171 32.7
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.3e-18 99.0 305 27.9
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 9.8e-17 93.6 500 24.0
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.6e-11 75.1 130 34.6
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.4e-10 73.2 156 44.9
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 4.0e-10 71.6 256 28.1
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.2e-09 70.1 102 40.2
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.7e-08 65.1 167 31.1
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 3.2e-07 62.0 210 24.3
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.7e-06 58.9 201 29.4


User provided reference genes

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