Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 3.0e-57 224.9 112 100.0
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 1.4e-30 136.3 112 63.4
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 1.1e-27 126.7 113 58.4
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 1.3e-20 103.2 112 52.7
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 3.7e-15 85.1 45 73.3
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 4.1e-14 81.6 45 73.3
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 4.1e-14 81.6 45 73.3
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 5.3e-14 81.3 55 67.3
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 7.0e-14 80.9 60 61.7
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 7.0e-14 80.9 60 61.7
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 7.0e-14 80.9 55 67.3
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 1.6e-13 79.7 62 61.3
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.0e-13 79.3 45 73.3
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 2.7e-13 79.0 54 66.7
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 2.7e-13 79.0 45 68.9
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 2.7e-13 79.0 45 66.7
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 5.9e-13 77.8 55 63.6
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 5.9e-13 77.8 83 50.6
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 5.9e-13 77.8 45 66.7
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 7.7e-13 77.4 55 63.6
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 7.7e-13 77.4 104 44.2
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 1.0e-12 77.0 49 69.4
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 1.7e-12 76.3 44 75.0
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 1.7e-12 76.3 104 43.3
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 1.7e-12 76.3 48 66.7
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 2.2e-12 75.9 104 43.3
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 2.2e-12 75.9 46 63.0
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 2.9e-12 75.5 50 66.0
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 5.0e-12 74.7 108 42.6
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 5.0e-12 74.7 74 47.3
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 8.5e-12 73.9 56 53.6
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 8.5e-12 73.9 45 64.4
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 8.5e-12 73.9 47 63.8
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 1.1e-11 73.6 50 66.0
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 1.1e-11 73.6 109 40.4
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.5e-11 73.2 45 64.4
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 1.9e-11 72.8 59 54.2
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 1.9e-11 72.8 59 54.2
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 1.9e-11 72.8 59 52.5
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 2.5e-11 72.4 78 50.0
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 2.5e-11 72.4 78 50.0
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 3.2e-11 72.0 50 64.0
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 3.2e-11 72.0 46 58.7
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 4.2e-11 71.6 45 60.0
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 5.5e-11 71.2 105 42.9
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 5.5e-11 71.2 105 42.9
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 5.5e-11 71.2 105 42.9
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 7.2e-11 70.9 67 53.7
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 7.2e-11 70.9 72 47.2
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 7.2e-11 70.9 58 53.4
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 7.2e-11 70.9 62 48.4
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 9.4e-11 70.5 62 48.4
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 1.6e-10 69.7 44 61.4
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 1.6e-10 69.7 44 63.6
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 1.6e-10 69.7 45 62.2
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 2.1e-10 69.3 45 62.2
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 2.1e-10 69.3 103 40.8
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 2.1e-10 69.3 40 65.0
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 2.7e-10 68.9 40 65.0
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 2.7e-10 68.9 45 55.6
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 3.6e-10 68.6 72 40.3
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 3.6e-10 68.6 72 43.1
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 4.7e-10 68.2 44 61.4
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 4.7e-10 68.2 40 70.0
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 4.7e-10 68.2 44 63.6
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 1.0e-09 67.0 100 33.0
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 1.0e-09 67.0 60 48.3
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 1.0e-09 67.0 64 48.4
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 1.8e-09 66.2 54 55.6
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 1.8e-09 66.2 42 59.5
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 1.8e-09 66.2 45 57.8
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 3.0e-09 65.5 44 54.5
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 5.2e-09 64.7 104 37.5
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 1.2e-08 63.5 83 43.4
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.2e-08 63.5 62 51.6
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.2e-08 63.5 58 46.6
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 4.4e-08 61.6 60 48.3
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 1.7e-07 59.7 87 37.9
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 1.7e-07 59.7 43 53.5
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 3.7e-07 58.5 52 50.0
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 9.1e-06 53.9 44 47.7


User provided reference genes

Program Settings