Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.1e-135 486.5 426 100.0
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.3e-94 350.1 391 81.1
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.2e-93 347.8 386 76.2
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.7e-92 344.0 389 77.6
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.7e-92 344.0 389 76.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 3.2e-91 339.7 439 69.0
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 3.1e-86 323.2 388 77.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 3.4e-85 319.7 387 76.0
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.6e-85 318.5 387 73.1
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-84 317.8 386 72.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.3e-84 317.8 387 74.9
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.5e-82 309.7 394 72.3
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.9e-81 306.2 386 66.8
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 7.3e-80 302.0 397 69.5
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 6.9e-78 295.4 387 69.8
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 2.6e-77 293.5 387 68.5
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 4.4e-77 292.7 386 69.2
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 4.4e-77 292.7 384 69.8
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 6.4e-76 288.9 392 70.9
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 1.4e-75 287.7 389 73.3
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.9e-75 287.3 388 70.1
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.2e-75 286.6 390 67.4
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.2e-75 286.6 384 72.4
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 5.4e-75 285.8 383 71.8
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.4e-75 285.8 383 71.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.4e-75 285.8 384 72.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 9.3e-75 285.0 384 72.1
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.2e-74 284.6 391 71.4
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.5e-74 283.1 387 69.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.3e-73 281.2 387 70.3
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.1e-72 278.1 391 65.7
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.3e-72 276.6 393 70.0
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.6e-72 275.8 388 69.6
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 9.6e-72 275.0 392 68.1
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.3e-71 274.6 387 69.5
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.1e-71 273.9 384 64.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 4.8e-71 272.7 324 73.1
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.1e-70 271.6 387 69.0
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.4e-70 270.4 388 66.0
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 3.1e-70 270.0 326 72.1
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.1e-70 270.0 386 69.4
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.1e-70 270.0 388 67.5
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 5.3e-70 269.2 389 68.4
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 9.0e-70 268.5 388 69.6
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.2e-69 268.1 393 69.2
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 2.0e-69 267.3 389 71.0
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.0e-69 267.3 389 68.9
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 2.0e-69 267.3 391 63.9
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.6e-69 266.9 387 70.3
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 4.5e-69 266.2 388 67.0
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 7.6e-69 265.4 389 69.2
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.7e-68 264.2 384 67.4
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.8e-68 263.1 389 66.1
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 4.9e-68 262.7 386 65.3
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 8.4e-68 261.9 390 66.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 8.4e-68 261.9 389 68.1
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.1e-67 261.5 386 67.6
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.4e-67 261.2 392 66.8
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.2e-67 259.6 377 68.4
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.6e-66 257.7 335 72.8
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 2.1e-66 257.3 387 68.7
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.5e-66 256.5 389 67.9
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 7.9e-66 255.4 372 68.3
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.3e-65 254.6 391 69.1
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.3e-65 254.6 391 67.8
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 2.3e-65 253.8 352 69.3
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.9e-65 253.1 397 65.7
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 5.1e-65 252.7 389 63.8
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.1e-64 251.5 393 69.0
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.9e-64 250.8 397 65.7
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.5e-64 250.4 393 65.1
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 2.5e-64 250.4 393 62.8
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 3.3e-64 250.0 391 65.0
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 3.3e-64 250.0 389 69.4
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.6e-64 249.2 427 61.4
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 7.4e-64 248.8 387 68.5
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.3e-63 248.1 331 72.8
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.3e-63 248.1 391 63.4
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.6e-63 247.7 384 70.8
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.6e-63 247.7 394 67.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 2.8e-63 246.9 392 66.3
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.8e-63 246.9 390 63.3
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.7e-63 246.5 384 70.6
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-62 244.6 427 62.8
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.8e-62 244.2 387 63.8
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 5.3e-62 242.7 325 68.9
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.2e-61 241.5 390 68.5
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.5e-61 241.1 410 69.5
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.6e-61 240.4 389 68.1
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.0e-60 238.4 331 69.5
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 2.2e-60 237.3 330 69.4
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.2e-60 237.3 330 69.4
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 2.9e-60 236.9 389 67.4
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.9e-60 236.9 393 65.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 3.8e-60 236.5 428 61.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.1e-59 235.0 388 61.6
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.2e-59 233.4 392 64.0
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 3.2e-59 233.4 396 61.6
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 4.2e-59 233.0 390 67.4
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.5e-59 232.6 386 62.2
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 7.1e-59 232.3 386 68.4
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 9.3e-59 231.9 393 64.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.2e-58 231.5 384 64.1
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.6e-58 231.1 392 63.5
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.5e-58 229.9 390 61.0
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.5e-58 229.9 390 61.0
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.5e-58 229.9 390 61.0
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.0e-57 228.4 390 60.3
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.8e-57 227.6 389 61.4
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.8e-57 227.6 389 61.4
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.3e-56 223.4 394 63.2
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 5.7e-56 222.6 325 67.4
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 7.4e-56 222.2 382 61.8
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.6e-55 221.1 393 60.1
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 2.1e-55 220.7 389 66.1
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.1e-55 220.7 330 68.5
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.1e-54 216.9 382 67.5
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.0e-53 214.2 429 64.6
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 1.0e-52 211.8 429 64.3
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.2e-52 210.7 195 59.0
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.2e-52 210.7 388 66.0
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 3.2e-51 206.8 388 66.0
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.2e-50 204.9 405 58.0
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.1e-50 204.1 394 56.9
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.8e-49 201.1 379 65.7
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 7.4e-48 195.7 397 57.2
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-46 191.0 335 62.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 4.2e-43 179.9 374 38.8
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.6e-42 177.9 384 62.8
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 4.6e-42 176.4 270 69.3
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.9e-41 173.3 338 55.9
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 5.1e-41 172.9 397 52.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 7.4e-40 169.1 390 60.5
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.7e-39 167.9 171 53.2
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.1e-38 163.3 130 69.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.0e-37 161.0 390 60.0
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.5e-37 159.8 403 56.8
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 4.5e-37 159.8 390 59.7
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 4.5e-37 159.8 390 59.7
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-36 158.3 198 50.0
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.3e-36 158.3 381 60.4
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.8e-36 156.8 404 57.7
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.1e-35 155.2 191 50.3
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.7e-34 150.6 374 61.8
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 6.1e-34 149.4 388 40.7
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 3.9e-33 146.7 284 70.1
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 8.8e-33 145.6 403 59.1
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 2.0e-32 144.4 330 61.5
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 2.2e-31 141.0 278 71.9
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 6.3e-31 139.4 291 62.5
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.7e-28 131.3 201 41.3
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.2e-28 131.0 258 66.3
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.2e-28 131.0 202 41.1
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 6.1e-26 122.9 391 48.1
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 6.1e-26 122.9 410 50.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.1e-22 112.1 245 78.4
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.2e-18 98.6 120 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 2.1e-18 97.8 198 34.8
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 2.7e-18 97.4 98 55.1
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.4e-17 95.1 111 62.2
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.8e-17 94.7 249 61.0
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.0e-16 91.3 90 54.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.8e-14 84.7 88 54.5
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.1e-11 75.5 159 41.5
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.1e-10 69.7 88 47.7
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 3.7e-07 60.5 100 58.0
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 4.1e-06 57.0 50 54.0
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 9.1e-06 55.8 48 54.2


User provided reference genes

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