Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 8.3e-250 866.7 475 100.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 4.9e-141 505.4 474 62.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.4e-141 505.0 515 60.2
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.1e-111 407.9 467 55.5
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 7.1e-108 395.2 477 52.8
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 7.8e-107 391.7 481 54.9
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 1.3e-106 391.0 479 54.7
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 5.6e-105 385.6 482 54.1
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 9.6e-105 384.8 481 50.7
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.0e-103 378.3 469 52.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 9.9e-102 374.8 489 49.9
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.7e-99 366.7 472 50.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.5e-99 366.3 351 59.3
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 3.0e-98 363.2 469 50.1
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.0e-98 363.2 339 63.7
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 4.3e-97 359.4 468 54.1
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.1e-96 357.1 481 47.0
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.2e-96 355.5 354 58.5
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 8.1e-96 355.1 477 48.0
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 4.0e-95 352.8 472 48.9
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 6.9e-95 352.1 477 48.0
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.0e-94 350.5 474 48.1
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 5.8e-94 349.0 479 49.7
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 2.2e-93 347.1 492 51.2
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 8.4e-93 345.1 495 46.9
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 8.4e-93 345.1 470 48.9
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.4e-92 344.4 487 47.8
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.4e-92 343.6 480 47.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 4.2e-92 342.8 423 50.8
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 7.1e-92 342.0 475 47.2
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.6e-91 340.9 353 55.8
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 2.1e-91 340.5 498 46.4
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 4.6e-91 339.3 487 47.4
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.8e-90 337.4 490 47.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 5.6e-89 332.4 298 61.1
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.8e-88 330.1 506 45.1
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 4.8e-88 329.3 458 47.2
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.8e-87 327.4 485 47.0
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 9.0e-87 325.1 353 55.8
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 9.0e-87 325.1 480 47.1
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 7.6e-86 322.0 498 44.8
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.3e-85 321.2 488 46.3
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.2e-85 320.5 466 50.2
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 8.4e-85 318.5 454 46.9
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.1e-84 318.2 461 46.6
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.5e-84 317.0 475 46.3
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 3.2e-84 316.6 460 47.2
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 3.2e-84 316.6 469 46.5
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-83 312.8 539 42.7
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 4.6e-83 312.8 480 45.0
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 4.6e-83 312.8 479 45.3
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 4.6e-83 312.8 483 44.5
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.0e-82 311.6 494 43.9
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 5.1e-82 309.3 463 47.3
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 5.1e-82 309.3 395 49.1
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 6.7e-82 308.9 351 53.0
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.1e-81 308.1 466 44.6
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 5.7e-81 305.8 340 55.6
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 2.8e-80 303.5 482 41.1
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.8e-79 300.8 464 45.7
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 2.4e-79 300.4 481 45.7
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 4.1e-79 299.7 413 48.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.1e-79 299.7 472 44.3
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.2e-78 298.1 464 44.2
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.6e-78 297.0 471 44.2
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.0e-77 295.0 413 47.2
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.4e-76 291.2 467 44.1
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.5e-76 290.4 483 44.5
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 4.2e-76 289.7 470 44.3
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.3e-74 283.9 479 43.8
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 5.1e-74 282.7 515 41.6
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.3e-72 278.1 480 41.7
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.7e-72 277.7 456 43.9
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.8e-72 276.2 371 49.3
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.1e-71 271.9 464 43.1
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 9.1e-71 271.9 626 35.8
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.6e-70 270.4 455 43.1
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.5e-70 269.6 464 42.9
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.5e-70 269.6 458 42.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 7.7e-70 268.9 342 49.7
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.0e-69 268.5 464 42.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.1e-68 265.0 331 50.8
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.2e-67 261.5 420 43.3
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 4.7e-67 259.6 354 46.6
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 3.9e-66 256.5 412 43.0
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.3e-64 251.5 295 51.9
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.2e-64 250.8 311 51.1
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.2e-64 250.8 482 41.1
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.7e-64 250.0 338 50.0
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.2e-64 248.8 348 47.4
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 8.2e-64 248.8 358 46.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.1e-63 248.4 334 50.0
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 3.1e-63 246.9 332 47.9
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 3.1e-63 246.9 377 43.2
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 5.3e-63 246.1 342 49.4
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 9.1e-63 245.4 347 46.4
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.2e-62 245.0 332 48.2
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.4e-62 243.4 269 55.4
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 7.7e-62 242.3 343 46.4
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 3.2e-60 236.9 293 52.9
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 5.5e-60 236.1 192 65.1
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 9.4e-60 235.3 334 48.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-59 235.0 453 39.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.2e-59 235.0 310 51.0
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-59 235.0 329 48.0
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 2.1e-59 234.2 293 52.2
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 6.1e-59 232.6 259 58.3
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 8.0e-59 232.3 310 50.6
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 8.0e-59 232.3 310 50.6
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.0e-58 231.9 255 54.5
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.4e-58 231.5 467 40.3
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 5.2e-58 229.6 446 40.4
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 3.7e-56 223.4 287 49.8
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 3.1e-55 220.3 372 41.1
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 3.1e-55 220.3 470 36.4
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.0e-55 219.2 259 55.6
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.6e-54 217.2 242 57.9
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 7.5e-49 199.1 335 43.6
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 9.7e-49 198.7 190 58.4
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.3e-48 198.4 272 47.8
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 7.0e-47 192.6 330 40.6
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.7e-45 188.0 349 42.1
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 6.1e-43 179.5 326 41.4
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 3.0e-42 177.2 263 47.1
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.4e-41 173.7 331 40.2
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 4.8e-40 169.9 154 61.0
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 9.1e-39 165.6 423 34.3
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 3.5e-38 163.7 372 37.4
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.0e-37 162.2 190 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.1e-35 154.5 383 35.2
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 6.1e-35 152.9 217 44.2
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 4.0e-34 150.2 136 61.0
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.2e-33 148.7 111 72.1
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.7e-32 144.8 352 33.5
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.8e-32 144.1 258 39.1
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.8e-32 144.1 264 42.4
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 4.1e-31 140.2 147 51.7
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.0e-29 135.6 81 81.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 2.9e-29 134.0 191 44.5
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.9e-28 131.3 143 53.8
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.8e-27 127.5 234 41.5
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.8e-26 124.8 144 50.7
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.3e-26 124.4 140 51.4
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.8e-25 119.0 71 78.9
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.7e-24 117.1 71 77.5
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 4.9e-24 116.7 192 43.2
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-21 109.0 70 72.9
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.3e-20 103.6 74 71.6
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 3.1e-18 97.4 110 47.3
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.9e-15 88.2 253 34.4
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.4e-15 87.8 253 34.4
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.4e-15 87.8 253 34.4
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.4e-15 87.8 103 45.6
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.5e-14 84.0 269 33.1
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.6e-13 79.7 82 54.9
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-12 78.2 92 46.7
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.6e-11 75.1 80 53.8
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.8e-11 74.3 99 55.6
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.3e-10 71.2 112 38.4
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 3.1e-10 70.9 89 48.3
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 8.9e-10 69.3 154 39.0
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.8e-09 66.6 85 43.5
Nn1g05398 Nelumbo nucifera HOM05D067915 ORTHO05D049297 9.2e-07 59.3 144 34.0


User provided reference genes

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