Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.5e-117 426.0 315 100.0
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.3e-105 387.1 313 94.2
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.0e-98 363.2 317 84.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.4e-98 362.1 315 83.8
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 5.8e-98 361.7 315 82.9
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 5.8e-98 361.7 315 84.1
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.3e-97 360.5 317 83.9
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.3e-97 360.5 317 83.9
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 2.2e-97 359.8 317 82.0
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 9.2e-96 354.4 317 82.3
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.0e-94 350.9 317 80.8
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.5e-93 347.1 318 79.6
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 2.5e-93 346.3 323 78.3
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 4.3e-93 345.5 318 79.2
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.2e-92 344.0 315 85.1
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.2e-92 344.0 325 77.8
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.2e-92 344.0 317 78.5
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 6.2e-92 341.7 317 82.6
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 8.1e-92 341.3 318 77.7
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.1e-91 340.9 317 80.4
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.4e-91 340.5 318 80.8
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 2.3e-91 339.7 318 82.1
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 2.3e-91 339.7 319 79.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.8e-91 338.2 307 82.4
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 8.9e-91 337.8 323 76.5
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.4e-90 335.9 307 82.1
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.4e-90 335.5 305 82.0
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 9.9e-90 334.3 318 82.4
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 2.2e-89 333.2 320 77.2
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.2e-89 333.2 320 77.5
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.7e-89 332.4 320 77.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 2.4e-88 329.7 316 84.8
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.7e-87 326.2 309 79.0
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.0e-86 324.3 315 82.2
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.3e-86 323.9 317 75.7
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 8.6e-86 321.2 317 80.8
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 4.7e-84 315.5 317 81.1
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 2.4e-83 313.2 316 80.1
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.1e-80 304.3 318 78.3
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.9e-80 303.5 318 78.3
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 7.1e-80 301.6 319 79.0
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 6.0e-79 298.5 316 77.5
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.0e-78 297.7 317 77.9
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.0e-78 297.7 315 77.8
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 2.3e-78 296.6 318 78.0
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 4.3e-77 292.4 304 81.2
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 8.1e-76 288.1 246 91.9
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 6.9e-75 285.0 316 76.9
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 3.4e-74 282.7 140 93.6
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 3.2e-72 276.2 278 80.2
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.6e-68 263.8 315 73.0
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 3.6e-68 262.7 305 75.4
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.8e-67 260.4 248 85.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 4.0e-67 259.2 249 84.7
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 5.3e-67 258.8 248 85.1
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.5e-66 255.8 248 85.1
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 9.9e-66 254.6 247 85.0
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 1.3e-65 254.2 248 85.1
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 2.2e-65 253.4 317 71.9
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.2e-65 253.4 248 84.3
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 4.9e-65 252.3 242 87.2
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.4e-65 251.9 252 82.5
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.4e-65 251.9 252 82.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 6.4e-65 251.9 317 72.2
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 8.4e-65 251.5 251 84.1
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 83.5
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 83.9
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.4e-64 250.8 247 83.8
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.4e-64 250.8 252 82.1
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.9e-64 250.4 241 87.1
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.4e-64 250.0 248 83.1
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.4e-64 250.0 252 82.5
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 82.7
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 82.7
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 82.7
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 82.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 82.7
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 4.2e-64 249.2 247 83.4
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 4.2e-64 249.2 247 83.4
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 4.2e-64 249.2 248 83.1
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 5.4e-64 248.8 248 83.5
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 5.4e-64 248.8 248 83.5
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 5.4e-64 248.8 248 82.7
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 5.4e-64 248.8 242 85.5
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 7.1e-64 248.4 248 83.1
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 7.1e-64 248.4 253 82.2
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 6.0e-63 245.4 146 79.5
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 6.0e-63 245.4 248 82.7
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 6.7e-62 241.9 249 81.9
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-60 237.7 142 76.1
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-60 237.7 142 76.1
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 6.2e-60 235.3 315 69.5
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 1.4e-59 234.2 142 73.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.4e-59 234.2 266 72.6
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.8e-59 233.8 141 74.5
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 3.1e-59 233.0 143 74.1
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 4.0e-59 232.6 142 73.2
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 9.0e-59 231.5 315 61.6
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 1.2e-58 231.1 142 74.6
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 2.0e-58 230.3 143 73.4
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 2.6e-58 229.9 142 73.9
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 5.8e-58 228.8 142 73.2
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 5.8e-58 228.8 142 73.2
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.8e-58 228.8 317 68.1
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 5.8e-58 228.8 142 71.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.7e-57 227.3 142 71.8
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.1e-56 224.6 142 70.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.1e-56 224.6 142 70.4
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 9.3e-56 221.5 142 69.0
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.6e-55 220.7 142 69.0
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 7.9e-55 218.4 315 64.1
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 4.0e-51 206.1 316 66.1
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 3.4e-50 203.0 329 51.1
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.3e-46 190.3 308 65.6
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 7.4e-45 185.3 307 61.6
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.4e-43 180.3 305 65.6
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 2.4e-43 180.3 144 56.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 2.0e-42 177.2 142 59.9
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-38 164.5 115 63.5
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.9e-37 160.6 205 72.2
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.0e-34 150.6 104 65.4
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 9.4e-32 141.7 95 68.4
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.7e-30 135.6 305 37.7
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.8e-27 127.5 110 52.7
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.4e-27 127.1 111 54.1
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.2e-24 116.7 310 29.0
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.8e-20 102.8 310 27.7
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.0e-18 97.4 91 50.5
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 5.7e-13 79.3 77 55.8
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.1e-11 75.1 116 40.5
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 7.0e-11 72.4 73 69.9
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.7e-09 67.8 111 37.8
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 4.2e-08 63.2 136 75.0
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 3.6e-07 60.1 34 73.5
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.2e-06 56.2 87 40.2
Ca_25715_v3 Cicer arietinum L. HOM05D037861 ORTHO05D149215 8.8e-06 55.5 29 82.8


User provided reference genes

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