Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 0.0e+00 1206.0 626 100.0
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.9e-303 1044.6 555 97.5
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 6.6e-255 884.0 555 83.2
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 6.9e-220 767.7 560 69.3
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.9e-210 735.7 568 67.1
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.0e-207 727.2 553 69.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.4e-207 726.9 559 68.0
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.3e-205 720.3 552 66.8
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.7e-205 719.9 553 68.2
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.7e-205 719.9 553 68.4
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.4e-204 716.1 555 67.2
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 3.1e-204 715.7 553 67.8
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.0e-204 714.5 562 64.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 9.1e-204 714.1 550 67.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.6e-203 713.4 559 66.0
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.7e-202 709.9 555 65.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.5e-201 706.1 561 66.8
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.2e-201 705.3 552 66.5
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.7e-200 701.8 552 65.4
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.8e-199 699.9 571 64.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.3e-199 699.5 550 66.4
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.2e-199 698.4 554 67.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.2e-199 698.4 493 72.0
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 6.7e-199 698.0 553 64.9
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-198 697.2 553 64.7
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.6e-198 696.0 549 65.8
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 4.4e-198 695.3 561 64.2
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.2e-197 693.0 554 65.5
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.8e-197 692.6 562 66.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.9e-194 682.6 557 65.4
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.1e-193 680.6 562 63.9
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 7.2e-193 677.9 559 62.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-192 676.0 548 66.8
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.7e-192 676.0 566 64.5
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 8.0e-192 674.5 559 65.1
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 8.0e-192 674.5 553 64.0
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.4e-191 673.7 552 63.9
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-190 670.6 560 62.0
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-190 670.2 550 66.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-190 669.5 560 61.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-190 668.7 556 62.1
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-189 667.2 570 63.5
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-189 667.2 570 63.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.7e-189 665.6 559 63.0
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-189 665.2 570 62.8
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 4.8e-189 665.2 570 62.8
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 4.8e-189 665.2 570 62.8
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.3e-189 664.8 556 61.7
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 8.3e-189 664.5 554 63.4
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-188 663.3 555 62.9
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-188 663.3 555 62.9
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.1e-188 662.1 560 61.6
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 4.5e-187 658.7 567 62.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-186 657.1 578 61.8
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.2e-186 656.4 563 60.7
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.2e-186 656.4 554 61.7
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 5.0e-186 655.2 560 61.8
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.5e-186 654.8 561 61.0
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 8.5e-186 654.4 569 61.5
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.9e-185 653.3 567 62.6
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.2e-185 652.5 568 61.1
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.6e-184 649.0 547 60.0
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 4.0e-183 645.6 555 61.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 5.2e-183 645.2 567 61.7
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 3.4e-182 642.5 555 62.9
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 9.8e-182 641.0 570 60.9
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-181 640.2 553 62.4
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.7e-181 640.2 560 60.7
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 4.9e-181 638.6 564 61.7
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 6.3e-181 638.3 561 59.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 8.3e-181 637.9 562 60.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.4e-180 637.1 547 61.1
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-180 636.7 553 62.6
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-180 636.7 548 59.3
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.1e-180 636.0 566 58.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 4.1e-180 635.6 564 61.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-179 634.0 567 61.7
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 5.9e-179 631.7 553 60.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.7e-178 630.2 557 59.1
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.3e-178 629.8 553 59.9
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 5.0e-178 628.6 553 59.5
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.0e-178 628.6 441 70.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.1e-177 627.5 568 59.7
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 6.1e-176 621.7 555 58.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.8e-175 620.2 565 58.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.6e-174 616.3 556 58.5
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 9.8e-174 614.4 559 60.6
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.2e-171 607.4 558 58.8
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 2.0e-171 606.7 566 57.6
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.7e-170 603.6 559 59.0
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.7e-170 603.6 559 57.4
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.0e-170 602.1 556 58.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 8.6e-170 601.3 553 58.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 9.5e-169 597.8 552 58.0
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.6e-168 597.0 570 57.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-168 596.7 572 58.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.1e-168 596.7 567 56.1
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 4.7e-168 595.5 557 58.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.8e-167 593.6 561 56.5
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.8e-166 588.6 442 66.1
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.1e-164 584.3 556 55.9
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-163 580.9 542 58.9
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 4.6e-163 578.9 550 56.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 5.0e-162 575.5 557 56.6
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.5e-161 573.2 444 66.7
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 7.3e-161 571.6 552 55.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 5.8e-158 562.0 450 62.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.9e-157 558.9 401 68.3
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.1e-156 557.8 559 56.4
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.4e-156 556.6 566 52.8
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 3.5e-155 552.7 576 52.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 7.3e-153 545.0 561 55.6
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.3e-151 540.0 391 67.8
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-150 537.7 562 55.0
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.8e-150 535.4 555 54.1
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.1e-148 531.2 565 53.5
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 5.4e-148 528.9 378 68.0
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.4e-148 528.9 551 54.1
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.0e-146 524.6 562 52.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 3.5e-139 499.6 333 73.3
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.2e-134 484.6 558 51.4
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 5.8e-134 482.3 557 49.2
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.3e-133 481.1 526 48.7
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.1e-131 473.8 294 77.9
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.5e-126 457.6 475 56.2
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.2e-116 422.9 447 47.2
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.9e-100 370.9 380 47.6
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 3.7e-96 356.7 388 50.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.3e-93 348.2 333 59.8
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 9.7e-89 332.0 509 43.4
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 5.9e-78 296.2 364 47.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 8.5e-77 292.4 192 73.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.7e-75 286.6 211 63.5
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.3e-74 284.3 191 78.0
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.4e-71 273.1 304 50.0
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.2e-68 263.8 352 44.3
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-53 215.7 150 70.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.6e-53 212.6 182 63.7
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.2e-49 202.2 276 47.1
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 9.2e-47 192.6 214 52.8
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.6e-41 174.5 291 40.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-24 118.2 92 65.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.4e-23 114.8 87 66.7
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.2e-23 114.0 482 25.1
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 8.1e-19 99.8 75 66.7
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.4e-18 98.2 70 70.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.4e-17 94.4 70 67.1
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.6e-14 85.5 171 30.4
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.9e-14 83.2 151 38.4
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.9e-14 83.2 141 42.6
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 8.7e-13 79.7 110 40.9
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.6e-12 77.0 88 48.9
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.8e-10 72.0 74 51.4
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 3.4e-09 67.8 52 61.5
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 9.9e-09 66.2 70 48.6
SGA_v2.0_scaffold52G19154 Striga asiatica HOM05D004704 ORTHO05D401368 7.1e-07 60.1 51 64.7


User provided reference genes

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