Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.0e-293 1010.4 508 100.0
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 4.1e-263 911.0 561 84.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.4e-255 885.2 555 83.2
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.3e-205 719.9 554 66.2
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.0e-198 694.5 468 74.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.0e-197 693.7 563 64.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-197 693.3 552 65.0
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.8e-197 693.0 547 65.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.8e-194 682.9 545 63.3
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.1e-194 682.2 546 64.8
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 3.4e-193 678.7 554 64.3
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.9e-193 677.9 556 64.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 7.7e-193 677.6 554 63.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.3e-192 676.8 549 64.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.0e-192 674.9 552 65.0
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 6.5e-192 674.5 553 63.3
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.1e-191 673.7 550 63.5
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 5.5e-191 671.4 547 63.3
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 7.2e-191 671.0 540 63.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 9.4e-191 670.6 553 62.9
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 9.4e-191 670.6 546 63.9
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 7.9e-190 667.5 543 63.5
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.3e-189 666.0 470 71.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.8e-189 664.1 552 62.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.3e-188 661.8 563 60.7
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.7e-188 661.4 551 63.9
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.2e-187 659.4 546 63.4
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 8.2e-187 657.5 549 63.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-186 656.4 566 61.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.3e-186 654.8 469 69.9
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-185 653.7 548 63.9
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.5e-185 653.3 542 62.9
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.9e-185 651.4 447 71.4
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-184 650.6 546 63.2
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 2.2e-184 649.4 536 62.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 8.5e-184 647.5 542 62.5
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.4e-183 646.7 567 59.6
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.5e-183 646.0 558 60.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 4.2e-183 645.2 544 62.5
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.2e-183 644.4 566 60.6
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.6e-182 643.3 566 60.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.6e-182 643.3 566 59.0
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.6e-182 643.3 527 60.5
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-181 640.2 541 62.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-181 640.2 541 62.7
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-180 637.1 545 60.7
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.0e-180 636.3 561 59.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.0e-180 636.3 522 63.4
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.4e-180 635.2 570 59.5
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 4.4e-180 635.2 570 59.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 4.4e-180 635.2 570 59.5
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.4e-180 635.2 472 67.8
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 5.7e-180 634.8 561 58.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 7.4e-180 634.4 570 59.5
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.3e-179 633.6 559 59.0
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-179 633.3 570 59.8
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.7e-179 633.3 558 61.6
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.7e-179 633.3 470 67.2
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-179 633.3 545 60.4
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.7e-179 632.1 563 58.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 4.8e-179 631.7 532 60.3
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.1e-178 630.6 568 58.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.0e-178 627.9 469 66.3
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.5e-177 626.7 548 59.5
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.0e-177 626.3 573 59.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.0e-177 626.3 546 59.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 7.7e-177 624.4 571 58.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-176 622.9 543 59.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.9e-176 622.5 518 61.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 8.5e-176 620.9 570 58.8
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.4e-175 620.2 546 59.3
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-175 619.8 547 59.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.2e-175 619.0 445 69.2
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.2e-175 618.6 573 57.4
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 4.2e-175 618.6 563 58.1
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-174 616.7 547 58.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.7e-174 615.9 565 57.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 4.7e-174 615.1 435 69.0
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 6.1e-174 614.8 570 58.8
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 6.1e-174 614.8 440 67.3
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 8.0e-174 614.4 438 68.7
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.6e-172 609.4 554 59.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.7e-171 606.7 547 58.3
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.4e-170 602.8 449 65.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.0e-168 597.4 568 56.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.3e-168 597.0 561 57.4
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.2e-168 596.3 550 58.9
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.2e-166 590.5 558 57.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.6e-166 590.1 548 58.2
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-165 587.4 554 56.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 2.3e-165 586.3 550 58.2
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.3e-165 586.3 450 67.3
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 5.2e-165 585.1 558 56.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.7e-165 584.7 407 70.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 6.7e-165 584.7 548 57.3
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.6e-164 582.8 456 63.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 6.3e-163 578.2 435 66.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-162 576.6 571 55.2
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 7.0e-162 574.7 544 56.8
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.7e-161 572.8 447 64.4
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 2.2e-160 569.7 548 55.5
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-159 567.4 560 56.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.5e-159 565.1 560 56.2
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.1e-158 563.1 434 65.0
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.8e-157 560.1 550 55.3
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.0e-157 558.9 401 68.6
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 3.1e-154 549.3 535 55.1
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 3.1e-154 549.3 438 63.0
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-153 547.4 558 54.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 3.8e-152 542.3 384 69.0
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 5.5e-151 538.5 555 55.1
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 9.5e-151 537.7 509 57.4
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.7e-150 535.4 563 53.6
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.0e-149 532.7 440 60.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.1e-146 522.3 503 56.5
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 3.9e-144 515.8 339 74.0
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.0e-144 515.4 541 54.0
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 9.5e-143 511.1 563 52.2
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.0e-141 507.7 443 59.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.9e-136 489.2 300 78.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.6e-134 482.6 360 66.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 8.9e-133 478.0 561 51.0
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 3.5e-129 466.1 363 61.7
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.0e-124 450.3 551 48.6
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.7e-121 439.9 453 48.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 7.1e-114 415.2 348 61.8
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.8e-102 376.7 380 48.7
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 5.5e-90 335.9 435 47.6
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 9.0e-85 318.5 256 59.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.0e-83 315.1 370 48.6
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 7.1e-82 308.9 198 75.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.4e-77 294.7 313 52.1
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.2e-74 282.3 211 62.6
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 4.6e-73 279.6 191 75.9
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-72 277.7 358 45.8
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.3e-67 261.5 229 57.2
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-60 236.5 156 74.4
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.5e-47 192.6 151 67.5
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 8.5e-43 179.1 260 46.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.5e-39 166.0 218 45.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 9.5e-34 149.1 204 46.6
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.2e-29 134.0 97 70.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.6e-28 130.2 92 71.7
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 5.6e-26 123.2 510 26.1
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.3e-18 97.4 119 45.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.6e-18 96.7 181 31.5
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 7.3e-18 96.3 75 66.7
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-17 94.7 70 70.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.6e-17 94.0 70 68.6
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 7.5e-15 86.3 58 72.4
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.5e-15 86.3 147 39.5
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 6.4e-14 83.2 80 56.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.0e-11 74.3 88 46.6
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.5e-10 71.2 73 56.2
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 5.6e-10 70.1 62 56.5
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 8.1e-09 66.2 70 47.1


User provided reference genes

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