Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 4.1e-89 331.3 155 100.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.6e-75 285.4 155 83.9
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 9.8e-75 283.5 155 83.2
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 3.9e-71 271.6 144 84.7
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.1e-70 270.0 149 81.2
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.1e-70 270.0 152 79.6
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.5e-70 269.6 153 82.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.5e-70 269.6 153 82.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.5e-70 269.6 147 81.6
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.9e-70 269.2 153 81.0
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 2.5e-70 268.9 150 82.0
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 4.3e-70 268.1 152 80.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 4.3e-70 268.1 145 84.1
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 5.6e-70 267.7 144 80.6
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 5.6e-70 267.7 152 80.3
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.6e-70 267.7 153 81.7
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 5.6e-70 267.7 150 82.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 7.3e-70 267.3 152 80.3
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 7.3e-70 267.3 151 80.1
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.2e-69 266.5 155 80.0
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.2e-69 266.5 151 79.5
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.2e-69 266.5 152 78.9
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.6e-69 266.2 155 80.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.6e-69 266.2 155 80.0
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.6e-69 266.2 148 81.8
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.6e-69 266.2 144 80.6
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 2.1e-69 265.8 144 80.6
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.1e-69 265.8 144 80.6
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.8e-69 265.4 145 81.4
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.8e-69 265.4 144 82.6
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 3.6e-69 265.0 147 79.6
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 3.6e-69 265.0 144 82.6
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 3.6e-69 265.0 153 80.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 4.7e-69 264.6 145 82.8
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.2e-69 264.2 149 79.2
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 6.2e-69 264.2 155 78.7
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 6.2e-69 264.2 145 81.4
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 8.0e-69 263.8 151 80.8
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 8.0e-69 263.8 150 80.7
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 8.0e-69 263.8 144 81.9
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.1e-68 263.5 150 80.0
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.1e-68 263.5 150 80.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.1e-68 263.5 155 78.7
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.4e-68 263.1 153 80.4
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.4e-68 263.1 144 81.9
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.8e-68 262.7 151 78.1
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.8e-68 262.7 154 76.6
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.8e-68 262.7 153 79.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.3e-68 262.3 148 81.1
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.3e-68 262.3 148 81.1
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.3e-68 262.3 151 80.1
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.3e-68 262.3 144 81.2
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 3.1e-68 261.9 151 79.5
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.1e-68 261.9 151 80.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 3.1e-68 261.9 151 80.1
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 3.1e-68 261.9 151 78.8
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.0e-68 261.5 151 78.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 5.2e-68 261.2 142 81.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 5.2e-68 261.2 155 78.1
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 6.8e-68 260.8 154 76.0
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 6.8e-68 260.8 144 80.6
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.2e-67 260.0 153 76.5
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 2.0e-67 259.2 152 77.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 3.4e-67 258.5 156 76.9
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 4.4e-67 258.1 143 79.7
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 5.8e-67 257.7 152 77.6
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 5.8e-67 257.7 145 80.0
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.8e-67 257.7 145 80.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.8e-67 257.7 145 80.0
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 7.5e-67 257.3 151 77.5
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 9.8e-67 256.9 156 75.6
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 9.8e-67 256.9 143 80.4
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.3e-66 256.5 144 79.9
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.3e-66 256.5 151 77.5
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.9e-66 255.4 153 75.2
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.9e-66 255.4 144 78.5
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.7e-66 255.0 145 79.3
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.4e-66 254.2 143 79.0
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.1e-65 253.4 155 75.5
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.1e-65 253.4 186 65.1
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.4e-65 252.3 157 73.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.2e-64 250.0 144 77.1
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.6e-64 249.6 140 78.6
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.5e-64 248.4 151 74.8
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.5e-64 248.4 150 77.3
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 4.6e-64 248.1 140 85.7
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.5e-62 243.0 142 75.4
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.3e-62 241.9 144 74.3
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 7.3e-62 240.7 185 64.3
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.1e-60 236.9 142 73.9
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 7.5e-59 230.7 126 82.5
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.3e-58 229.9 122 82.0
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 3.0e-55 218.8 142 71.8
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 5.1e-55 218.0 140 72.9
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 5.1e-55 218.0 133 75.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 8.6e-55 217.2 119 80.7
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.9e-54 216.1 120 80.0
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.6e-54 214.5 124 79.0
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 5.6e-54 214.5 124 79.0
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 7.3e-54 214.2 129 77.5
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 9.5e-54 213.8 140 68.6
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 6.2e-53 211.1 120 78.3
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 6.2e-53 211.1 132 74.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 8.1e-53 210.7 119 80.7
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.5e-51 206.5 164 62.2
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 7.6e-51 204.1 120 76.7
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.9e-49 199.5 112 83.0
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.9e-47 191.8 106 81.1
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 8.7e-47 190.7 99 84.8
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.6e-45 186.4 115 74.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.6e-40 169.9 153 52.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.1e-38 163.7 150 52.7
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.5e-38 163.3 99 76.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.3e-38 161.8 127 63.0
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 7.3e-38 161.0 150 54.7
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.6e-37 159.8 98 75.5
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.6e-37 158.7 159 50.9
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 8.1e-37 157.5 150 52.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 8.1e-37 157.5 88 80.7
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.8e-35 151.4 155 47.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 7.6e-35 151.0 144 50.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 3.8e-34 148.7 153 51.6
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.4e-28 130.2 85 68.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 5.3e-28 128.3 144 45.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 4.5e-27 125.2 133 48.1
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.4e-25 120.2 72 77.8
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.2e-24 117.1 70 77.1
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.0e-23 114.0 59 81.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.6e-21 106.7 53 86.8
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.9e-20 101.3 120 44.2
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 9.3e-17 90.9 154 37.0
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.9e-14 83.2 82 51.2
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.2e-10 69.7 142 33.8
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 5.0e-10 68.6 94 39.4
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 5.5e-09 65.1 31 87.1
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 1.6e-08 63.5 143 29.4
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 3.6e-08 62.4 157 28.0
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.5e-06 56.2 84 39.3
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 9.7e-06 54.3 67 43.3


User provided reference genes

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