Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 0.0e+00 1166.4 596 100.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.4e-262 909.4 587 81.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.3e-260 902.9 587 80.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 6.5e-252 874.0 586 77.5
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.6e-248 862.1 571 78.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.3e-247 859.8 587 77.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.0e-241 840.1 566 78.3
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.7e-237 825.5 573 75.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 5.9e-237 824.3 567 76.5
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.3e-236 823.2 580 76.2
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.6e-234 816.2 576 75.3
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 8.0e-234 813.9 562 76.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.4e-233 813.1 556 77.0
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.3e-233 812.4 574 75.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.5e-232 809.7 569 73.6
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.0e-232 809.3 584 73.1
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.4e-232 808.5 575 74.1
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.8e-232 807.7 542 78.4
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 7.5e-232 807.4 556 76.6
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.7e-231 806.2 571 75.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.7e-231 805.1 575 73.9
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.9e-230 802.7 585 72.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.1e-230 801.6 561 76.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.1e-230 801.6 581 73.5
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 5.4e-230 801.2 552 76.3
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 7.0e-230 800.8 582 72.3
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.6e-229 799.7 581 73.5
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.5e-229 798.5 573 74.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.8e-229 797.3 556 75.7
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.6e-228 793.9 556 75.4
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.1e-227 793.5 564 75.5
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.9e-227 792.7 584 73.3
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 3.3e-227 792.0 562 74.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.3e-227 791.6 556 75.5
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.6e-226 789.6 558 74.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-225 786.6 563 74.1
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-225 786.6 563 74.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 6.8e-225 784.3 593 71.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.5e-224 783.1 517 79.1
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 4.4e-224 781.6 541 75.0
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 4.4e-224 781.6 547 76.1
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 5.8e-224 781.2 554 74.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.3e-223 780.0 558 73.8
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 2.9e-223 778.9 593 71.2
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.9e-223 778.1 559 74.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 8.3e-223 777.3 543 76.2
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.9e-222 776.2 515 78.1
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 7.0e-222 774.2 541 74.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.2e-221 773.5 541 74.5
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.6e-221 773.1 561 73.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.5e-221 771.9 560 73.6
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.5e-221 771.9 539 75.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 4.6e-221 771.5 553 74.0
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 6.0e-221 771.2 537 73.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.0e-221 771.2 541 74.3
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.3e-220 770.0 543 75.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.7e-220 769.6 541 74.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.7e-220 769.6 568 73.1
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.1e-220 768.1 543 74.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 6.6e-220 767.7 556 73.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.5e-219 766.5 543 74.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.5e-219 765.8 555 72.4
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 7.3e-219 764.2 519 76.7
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-218 763.5 543 75.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.8e-218 762.3 581 71.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 5.2e-217 758.1 543 73.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 6.8e-217 757.7 554 72.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.4e-216 755.4 554 72.4
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.4e-216 755.0 554 72.6
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 7.5e-216 754.2 537 74.9
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.7e-215 753.1 564 70.7
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.7e-215 753.1 554 72.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.4e-214 750.0 560 71.8
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 9.2e-214 747.3 560 71.4
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.5e-213 745.3 554 72.0
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 6.0e-213 744.6 562 70.6
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.7e-212 743.0 560 71.1
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.1e-212 741.5 554 71.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 8.6e-212 740.7 559 70.1
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 3.6e-210 735.3 512 76.2
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.4e-208 728.4 554 70.2
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.7e-207 726.5 564 69.0
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 6.4e-207 724.5 547 70.4
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 6.4e-207 724.5 539 71.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.4e-206 723.4 591 66.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.2e-206 722.2 562 68.1
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.2e-206 721.8 562 69.4
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.2e-205 720.3 539 71.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.6e-205 719.9 591 66.3
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.1e-205 719.5 556 68.7
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.9e-204 715.3 566 67.8
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 3.9e-204 715.3 526 71.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.9e-204 715.3 555 69.2
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.3e-203 711.8 526 70.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 5.6e-203 711.4 526 70.9
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.2e-202 710.3 612 63.7
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.6e-202 709.9 521 71.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.1e-202 709.5 561 68.1
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.8e-202 709.1 582 66.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 6.2e-202 708.0 569 67.1
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.1e-202 707.6 563 68.2
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.8e-201 706.4 471 76.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 9.0e-201 704.1 526 70.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 9.0e-201 704.1 526 70.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 3.4e-200 702.2 522 68.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.9e-199 699.1 466 77.5
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 6.4e-199 698.0 553 68.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.0e-197 691.4 560 66.6
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.1e-196 688.3 554 67.7
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.1e-196 688.3 545 68.8
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 6.6e-196 688.0 565 66.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-195 686.8 545 67.5
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.3e-195 685.6 512 70.3
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 4.3e-195 685.3 545 67.3
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 4.3e-195 685.3 545 67.3
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 5.6e-195 684.9 565 66.0
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.6e-192 676.0 581 65.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.6e-189 666.8 500 70.6
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.6e-189 666.8 500 70.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.8e-188 663.3 477 72.3
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.3e-186 657.1 538 68.0
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-185 654.1 543 63.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.5e-184 648.7 528 66.3
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.8e-183 645.6 557 62.7
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 8.4e-183 644.4 514 67.3
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.3e-180 636.3 544 66.7
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.0e-180 636.0 461 71.4
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-180 636.0 464 70.9
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.6e-178 630.2 586 59.2
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.2e-178 628.2 482 67.6
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.3e-175 620.5 469 69.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.8e-175 619.0 520 63.5
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-174 617.5 486 66.9
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.2e-174 615.5 536 63.2
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.1e-172 608.6 560 59.8
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.2e-170 603.2 565 59.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.7e-170 602.4 470 68.3
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.5e-168 597.0 471 69.9
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.9e-166 590.1 470 65.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.2e-166 589.0 454 68.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.2e-166 588.2 468 66.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.3e-162 577.4 359 81.1
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.2e-162 576.6 366 79.2
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-158 562.8 358 80.4
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.3e-151 540.8 354 78.5
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 7.7e-144 515.0 517 54.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.2e-140 502.3 341 76.8
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.6e-136 490.7 424 60.1
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.7e-133 479.9 331 75.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 7.2e-126 455.3 479 54.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 9.8e-123 444.9 352 66.5
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.2e-104 384.8 412 52.9
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.6e-104 384.4 243 77.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.4e-73 280.8 154 88.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 8.2e-53 212.6 144 78.5
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.9e-41 174.9 203 47.8
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 4.7e-32 143.7 99 75.8
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.9e-26 124.4 88 70.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 8.5e-26 122.9 107 58.9
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.5e-25 121.3 107 59.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 9.4e-25 119.4 104 60.6
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 9.4e-25 119.4 104 60.6
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 8.0e-24 116.3 115 56.5
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.0e-23 114.0 88 64.8
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.8e-23 113.2 97 63.9
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 4.4e-22 110.5 86 66.3
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.9e-19 100.1 99 57.6
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 4.2e-17 94.0 70 77.1
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-13 82.0 186 31.2
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.9e-11 73.6 160 32.5
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 7.7e-11 73.2 96 39.6
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.5e-09 68.9 66 59.1
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-09 68.6 160 31.9
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.2e-08 65.9 56 51.8
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.0e-08 63.2 186 31.2
SGA_v2.0_scaffold20G09225 Striga asiatica HOM05D004038 ORTHO05D004619 1.2e-06 59.3 44 72.7
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.7e-06 57.0 77 45.5


User provided reference genes

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