Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 3.4e-78 295.0 161 100.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.3e-66 256.5 161 81.4
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.8e-64 248.8 161 76.4
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 5.2e-63 244.6 161 75.8
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.9e-61 238.0 161 75.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 9.6e-57 223.8 154 71.4
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.8e-56 222.2 161 67.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.4e-55 219.9 159 67.9
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.8e-55 219.5 161 67.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.8e-53 211.8 160 63.8
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 4.9e-53 211.5 161 65.2
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.4e-53 210.7 161 64.6
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.1e-52 210.3 161 64.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 4.2e-52 208.4 161 64.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.6e-51 206.5 161 64.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.6e-51 206.5 161 62.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.6e-51 206.5 161 62.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 7.9e-51 204.1 161 60.9
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 7.9e-51 204.1 161 60.9
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.3e-50 203.4 159 61.6
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.8e-50 203.0 161 60.9
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.3e-50 202.6 161 62.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 3.0e-50 202.2 161 62.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.0e-50 202.2 161 60.9
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 6.7e-50 201.1 161 60.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.1e-49 200.3 159 59.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.5e-49 199.9 162 59.9
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.5e-49 199.9 161 61.5
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.5e-49 199.1 158 62.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.3e-49 198.4 161 58.4
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.4e-49 197.6 161 59.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.4e-49 197.6 158 60.8
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.4e-49 197.6 158 60.8
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 7.4e-49 197.6 158 60.8
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 9.6e-49 197.2 161 59.6
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 9.6e-49 197.2 161 60.2
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.3e-48 196.8 160 59.4
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.3e-48 196.8 161 59.6
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.1e-48 196.1 161 57.8
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.1e-48 196.1 159 60.4
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.1e-48 196.1 161 59.6
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.1e-48 196.1 161 59.6
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.1e-48 196.1 161 59.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.8e-48 195.7 161 60.2
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.8e-48 195.7 161 62.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 3.7e-48 195.3 161 60.2
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 6.2e-48 194.5 161 60.2
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.2e-48 194.5 161 58.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.1e-48 194.1 159 57.2
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 8.1e-48 194.1 158 60.8
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.1e-47 193.7 159 60.4
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.8e-47 193.0 159 59.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.8e-47 193.0 160 58.8
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.8e-47 193.0 161 59.6
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.1e-47 192.2 159 59.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.1e-47 192.2 159 59.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 5.3e-47 191.4 160 57.5
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 5.3e-47 191.4 161 58.4
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 6.9e-47 191.0 161 59.6
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 6.9e-47 191.0 159 57.2
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 6.9e-47 191.0 159 60.4
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.2e-46 190.3 181 56.9
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-46 189.9 161 56.5
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.5e-46 189.9 159 58.5
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.6e-46 189.1 161 55.9
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.4e-46 188.7 233 46.4
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 4.5e-46 188.3 161 56.5
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 9.9e-46 187.2 161 56.5
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-45 186.8 161 55.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.3e-45 186.8 158 57.6
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.7e-45 186.4 158 55.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.7e-45 186.4 158 55.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.2e-45 186.0 161 55.9
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-45 186.0 158 55.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.2e-45 186.0 161 55.9
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.2e-45 186.0 160 58.8
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.9e-45 185.7 161 54.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-45 185.7 161 55.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 3.8e-45 185.3 161 55.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.8e-45 185.3 158 55.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.9e-45 184.9 161 55.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 4.9e-45 184.9 153 58.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.9e-45 184.9 153 58.8
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.9e-45 184.9 153 58.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.9e-45 184.9 153 58.8
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 4.9e-45 184.9 158 55.1
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 6.4e-45 184.5 161 55.3
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 8.4e-45 184.1 160 57.5
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 8.4e-45 184.1 160 56.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-44 183.7 156 57.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-44 183.7 156 57.7
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-44 183.3 153 58.2
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.2e-44 182.2 160 53.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.2e-44 182.2 161 54.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 4.2e-44 181.8 158 55.1
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 9.3e-44 180.6 161 55.9
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.1e-43 179.5 158 57.6
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 2.1e-43 179.5 160 55.0
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.7e-43 179.1 160 53.8
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.5e-43 178.7 168 53.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 4.6e-43 178.3 160 55.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 7.9e-43 177.6 160 53.8
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 7.9e-43 177.6 159 57.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.0e-42 177.2 170 51.8
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.0e-42 177.2 160 53.8
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.3e-42 176.8 160 54.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.3e-42 176.8 160 55.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.8e-42 176.4 160 54.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.3e-42 176.0 158 52.5
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.3e-42 176.0 163 54.0
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 3.9e-42 175.3 146 59.6
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 6.7e-42 174.5 171 50.9
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-41 173.3 160 53.8
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.3e-41 172.2 151 53.6
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.3e-41 172.2 161 52.2
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 5.6e-41 171.4 172 50.6
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 5.6e-41 171.4 161 52.8
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-40 168.7 204 47.1
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.4e-39 166.8 192 46.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.1e-39 165.6 151 50.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 6.9e-39 164.5 151 52.3
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.0e-38 162.9 155 50.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 3.4e-38 162.2 159 52.2
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.6e-38 161.0 155 50.3
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.6e-38 161.0 154 51.9
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.0e-37 160.6 155 51.0
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.8e-37 158.7 155 49.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.1e-36 157.1 161 47.8
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.1e-36 157.1 161 47.8
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-36 156.8 154 49.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-36 156.8 154 49.4
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.4e-36 156.8 154 49.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-35 153.3 154 48.7
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 6.0e-35 151.4 153 51.0
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.0e-34 150.6 155 47.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.0e-34 150.6 154 48.1
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.5e-33 146.0 89 76.4
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.2e-32 142.9 160 47.5
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.8e-32 142.5 89 70.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.8e-32 141.7 116 59.5
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.8e-32 141.7 116 59.5
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.5e-30 136.7 144 51.4
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.6e-30 136.0 89 66.3
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.6e-30 134.4 89 70.8
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.2e-29 132.9 139 51.1
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.2e-29 132.9 139 51.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.8e-29 132.1 160 45.6
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 8.5e-29 131.0 162 45.7
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 8.5e-29 131.0 89 65.2
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-28 128.6 133 48.1
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-27 126.7 115 50.4
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.7e-24 116.7 156 39.7
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 6.3e-24 114.8 84 58.3
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.4e-23 113.6 116 49.1
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 3.4e-22 109.0 160 35.6
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 7.7e-22 107.8 82 57.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 6.5e-21 104.8 149 38.9
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-20 103.6 160 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.0e-18 97.4 149 30.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.6e-17 92.8 103 42.7
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.3e-16 88.2 147 29.3
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 4.1e-15 85.5 71 50.7
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-14 82.8 71 57.7
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.7e-13 80.1 150 28.7
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 6.5e-13 78.2 160 30.0
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 8.5e-13 77.8 52 67.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.5e-13 77.8 116 31.0
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-11 73.9 87 43.7
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-09 67.4 39 71.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 3.3e-09 65.9 146 26.0
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 2.2e-08 63.2 113 32.7
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.1e-07 60.8 136 22.8
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.4e-07 60.5 96 39.6
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.5e-06 55.8 46 52.2


User provided reference genes

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