Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08730 Striga asiatica HOM05D000578 ORTHO05D000422 4.7e-55 217.6 109 100.0
SGA_v2.0_scaffold17G08148 Striga asiatica HOM05D000578 ORTHO05D000422 7.2e-40 167.2 109 81.7
Oeu020508.1 Olea europaea HOM05D000578 ORTHO05D000422 5.0e-25 117.9 101 65.3
MSTRG.24578 Avicennia marina HOM05D000578 ORTHO05D000422 3.3e-24 115.2 110 60.9
Dinv22751 Davidia involucrata HOM05D000578 ORTHO05D000422 1.2e-23 113.2 98 61.2
Cc05_g00200 Coffea canephora HOM05D000578 ORTHO05D000422 3.6e-23 111.7 99 63.6
SalBow3G0357 Salvia bowleyana HOM05D000578 ORTHO05D000422 3.0e-22 108.6 106 59.4
Migut.G01004 Erythranthe guttata HOM05D000578 ORTHO05D000422 5.2e-22 107.8 106 58.5
FAN07G0942 Fragaria x ananassa HOM05D000578 ORTHO05D000422 1.5e-21 106.3 108 55.6
FvH4_4g10930 Fragaria vesca HOM05D000578 ORTHO05D000422 5.7e-21 104.4 108 55.6
FAN12G1676 Fragaria x ananassa HOM05D000578 ORTHO05D000422 5.7e-21 104.4 108 55.6
TWI63G1709 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 7.5e-21 104.0 96 61.5
MSTRG.9758 Avicennia marina HOM05D000578 ORTHO05D000422 1.3e-20 103.2 112 58.0
Actinidia24627 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.8e-20 102.1 106 55.7
Rhsim09G0024500 Rhododendron simsii HOM05D000578 ORTHO05D000422 2.8e-20 102.1 113 52.2
Dinv44179 Davidia involucrata HOM05D000578 ORTHO05D000422 8.3e-20 100.5 98 58.2
CSS0049536 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 1.1e-19 100.1 104 56.7
FAN17G1864 Fragaria x ananassa HOM05D000578 ORTHO05D000422 1.1e-19 100.1 108 53.7
vmacro00642 Vaccinium macrocarpon HOM05D000578 ORTHO05D000422 1.8e-19 99.4 102 53.9
VMungo1127G0584 Vigna mungo HOM05D000578 ORTHO05D000422 1.8e-19 99.4 99 55.6
Glyma.12G051700 Glycine max HOM05D000578 ORTHO05D000422 2.4e-19 99.0 99 55.6
Glyma.13G344700 Glycine max HOM05D000578 ORTHO05D000422 2.4e-19 99.0 97 51.5
RcHm_v2.0_Chr4g0406441 Rosa chinensis HOM05D000578 ORTHO05D000422 4.1e-19 98.2 100 57.0
TAR636G0494 Trochodendron aralioides HOM05D000578 ORTHO05D000422 4.1e-19 98.2 99 56.6
Phvul.011G053700 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 5.4e-19 97.8 99 55.6
Prupe.1G197100 Prunus persica HOM05D000578 ORTHO05D000422 7.0e-19 97.4 108 53.7
Phvul.005G153500 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 9.2e-19 97.1 100 51.0
TWI15G0493 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 9.2e-19 97.1 96 57.3
Glyma.15G029500 Glycine max HOM05D000578 ORTHO05D000422 1.2e-18 96.7 98 52.0
Prupe.3G155900 Prunus persica HOM05D000578 ORTHO05D000422 1.2e-18 96.7 101 56.4
TPR.G34204 Trifolium pratense HOM05D000578 ORTHO05D000422 1.6e-18 96.3 98 56.1
Lj3g0023856 Lotus japonicus HOM05D000578 ORTHO05D000422 2.0e-18 95.9 97 54.6
MD04G1042700 Malus domestica HOM05D000578 ORTHO05D000422 3.5e-18 95.1 108 53.7
Sabra17G0017100 Salix brachista HOM05D000578 ORTHO05D000422 3.5e-18 95.1 98 56.1
GSVIVG01010794001 Vitis vinifera HOM05D000578 ORTHO05D000422 4.5e-18 94.7 99 54.5
Actinidia34592 Actinidia chinensis HOM05D000578 ORTHO05D000422 5.9e-18 94.4 106 51.9
COL.COLO4_12974 Corchorus olitorius HOM05D000578 ORTHO05D000422 7.8e-18 94.0 108 55.6
Haze_01471 Corylus avellana HOM05D000578 ORTHO05D000422 7.8e-18 94.0 96 59.4
TPR.G18858 Trifolium pratense HOM05D000578 ORTHO05D000422 7.8e-18 94.0 103 48.5
Lj6A77T27 Lonicera japonica HOM05D000578 ORTHO05D000422 1.0e-17 93.6 94 51.1
Lju337A6T19 Lonicera japonica HOM05D000578 ORTHO05D000422 1.0e-17 93.6 94 51.1
VMungo1080G1414 Vigna mungo HOM05D000578 ORTHO05D000422 1.0e-17 93.6 98 50.0
Cfa021323 Carpinus fangiana HOM05D000578 ORTHO05D000422 1.7e-17 92.8 99 58.6
Lalb_Chr24g0396801 Lupinus albus HOM05D000578 ORTHO05D000422 1.7e-17 92.8 118 47.5
Ciclev10021980m.g Citrus clementina HOM05D000578 ORTHO05D000422 2.3e-17 92.4 104 51.9
Glyma.11G127100 Glycine max HOM05D000578 ORTHO05D000422 2.3e-17 92.4 97 53.6
Nn1g09645 Nelumbo nucifera HOM05D000578 ORTHO05D000422 2.9e-17 92.0 100 55.0
Thecc.04G176700 Theobroma cacao HOM05D000578 ORTHO05D000422 2.9e-17 92.0 98 56.1
Ca_01253_v3 Cicer arietinum L. HOM05D000578 ORTHO05D000422 3.8e-17 91.7 104 48.1
Nn1g09640 Nelumbo nucifera HOM05D000578 ORTHO05D000422 3.8e-17 91.7 100 54.0
TWI38G0039 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 3.8e-17 91.7 96 55.2
Eucgr.A00097 Eucalyptus grandis HOM05D000578 ORTHO05D000422 6.6e-17 90.9 106 52.8
Atru.chr4.1242 Acer truncatum HOM05D000578 ORTHO05D000422 8.6e-17 90.5 100 53.0
Peaxi162Scf00126g00624 Petunia axillaris HOM05D000578 ORTHO05D000422 8.6e-17 90.5 110 52.7
CsaV3_6G006790 Cucumis sativus L. HOM05D000578 ORTHO05D000422 1.1e-16 90.1 98 57.1
Lalb_Chr03g0026061 Lupinus albus HOM05D000578 ORTHO05D000422 1.1e-16 90.1 97 52.6
AUR62002328 Chenopodium quinoa HOM05D000578 ORTHO05D000422 1.9e-16 89.4 98 48.0
MELO3C022445.2 Cucumis melo HOM05D000578 ORTHO05D000422 1.9e-16 89.4 98 56.1
Potri.007G130100 Populus trichocarpa HOM05D000578 ORTHO05D000422 1.9e-16 89.4 108 50.0
unitig_52.g17680 Utricularia gibba HOM05D000578 ORTHO05D000422 2.5e-16 89.0 96 51.0
AUR62023859 Chenopodium quinoa HOM05D000578 ORTHO05D000422 3.3e-16 88.6 97 48.5
Potri.017G028301 Populus trichocarpa HOM05D000578 ORTHO05D000422 3.3e-16 88.6 98 54.1
Lalb_Chr14g0372501 Lupinus albus HOM05D000578 ORTHO05D000422 4.3e-16 88.2 107 52.3
TAR362G0398 Trochodendron aralioides HOM05D000578 ORTHO05D000422 4.3e-16 88.2 99 53.5
Duzib151G1043 Durio zibethinus HOM05D000578 ORTHO05D000422 5.6e-16 87.8 97 57.7
Eucgr.H00366 Eucalyptus grandis HOM05D000578 ORTHO05D000422 5.6e-16 87.8 98 56.1
MBI11_g23346_MAGBIO Magnolia biondii HOM05D000578 ORTHO05D000422 5.6e-16 87.8 101 51.5
Medtr2g099010 Medicago truncatula HOM05D000578 ORTHO05D000422 5.6e-16 87.8 114 43.9
Potri.017G028300 Populus trichocarpa HOM05D000578 ORTHO05D000422 5.6e-16 87.8 98 54.1
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 7.3e-16 87.4 108 53.7
Duzib268G1205 Durio zibethinus HOM05D000578 ORTHO05D000422 9.5e-16 87.0 97 54.6
Nitab4.5_0004983g0040 Nicotiana tabacum HOM05D000578 ORTHO05D000422 1.2e-15 86.7 106 49.1
Sabra07G0105900 Salix brachista HOM05D000578 ORTHO05D000422 1.2e-15 86.7 113 50.4
ClCG06G000940 Citrullus lanatus HOM05D000578 ORTHO05D000422 1.6e-15 86.3 98 55.1
Sc25g0002600 Simmondsia chinensis HOM05D000578 ORTHO05D000422 1.6e-15 86.3 106 50.0
CANSAT78G0136 Cannabis sativa HOM05D000578 ORTHO05D000422 2.1e-15 85.9 109 47.7
CiPaw.01G098000 Carya illinoinensis HOM05D000578 ORTHO05D000422 2.1e-15 85.9 96 52.1
Lsat_1_v5_gn_1_77880 Lactuca sativa HOM05D000578 ORTHO05D000422 2.1e-15 85.9 110 51.8
Lalb_Chr19g0138351 Lupinus albus HOM05D000578 ORTHO05D000422 2.1e-15 85.9 116 50.0
MD17G1243400 Malus domestica HOM05D000578 ORTHO05D000422 6.1e-15 84.3 103 52.4
Manes.11G122000 Manihot esculenta HOM05D000578 ORTHO05D000422 6.1e-15 84.3 99 51.5
DCAR_028444 Daucus carota HOM05D000578 ORTHO05D000422 8.0e-15 84.0 105 49.5
Migut.N03102 Erythranthe guttata HOM05D000578 ORTHO05D000422 8.0e-15 84.0 109 44.0
Lj3g0014659 Lotus japonicus HOM05D000578 ORTHO05D000422 8.0e-15 84.0 104 48.1
PGR142G2358 Punica granatum HOM05D000578 ORTHO05D000422 8.0e-15 84.0 98 52.0
Sed0011509 Sechium edule HOM05D000578 ORTHO05D000422 8.0e-15 84.0 97 53.6
Aqoxy2G04145 Aquilegia oxysepala HOM05D000578 ORTHO05D000422 1.4e-14 83.2 99 48.5
Nitab4.5_0002553g0030 Nicotiana tabacum HOM05D000578 ORTHO05D000422 1.4e-14 83.2 106 47.2
Ah.07g202220 Amaranthus hybridus HOM05D000578 ORTHO05D000422 1.8e-14 82.8 97 46.4
BcaC07g36814 Brassica carinata HOM05D000578 ORTHO05D000422 1.8e-14 82.8 97 48.5
Cpa.g.sc9.300 Carica papaya HOM05D000578 ORTHO05D000422 1.8e-14 82.8 108 50.0
HanXRQChr11g0343681 Helianthus annuus HOM05D000578 ORTHO05D000422 1.8e-14 82.8 109 50.5
Rhsim02G0081500 Rhododendron simsii HOM05D000578 ORTHO05D000422 2.3e-14 82.4 97 48.5
BraA08t35522Z Brassica rapa HOM05D000578 ORTHO05D000422 4.0e-14 81.6 111 44.1
arahy.Tifrunner.gnm1.ann1.UU73T8 Arachis hypogaea HOM05D000578 ORTHO05D000422 5.2e-14 81.3 104 50.0
arahy.Tifrunner.gnm1.ann1.Z3NZLL Arachis hypogaea HOM05D000578 ORTHO05D000422 5.2e-14 81.3 104 50.0
Medtr4g067320 Medicago truncatula HOM05D000578 ORTHO05D000422 5.2e-14 81.3 110 45.5
Hund03171 Selenicereus undatus HOM05D000578 ORTHO05D000422 6.8e-14 80.9 99 47.5
C08p02360 Brassica napus HOM05D000578 ORTHO05D000422 8.9e-14 80.5 97 47.4
BolC8t47028H Brassica oleracea HOM05D000578 ORTHO05D000422 8.9e-14 80.5 97 47.4
Aa31LG1G8220 Aethionema arabicum HOM05D000578 ORTHO05D000422 1.5e-13 79.7 97 49.5
Gohir.A09G211875 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.5e-13 79.7 106 47.2
Gohir.D09G205300 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.5e-13 79.7 106 47.2
Gorai.006G229300 Gossypium raimondii HOM05D000578 ORTHO05D000422 1.5e-13 79.7 106 47.2
Sp1g04850 Schrenkiella parvula HOM05D000578 ORTHO05D000422 1.5e-13 79.7 96 47.9
CiPaw.02G053200 Carya illinoinensis HOM05D000578 ORTHO05D000422 2.0e-13 79.3 100 50.0
A08p36160 Brassica napus HOM05D000578 ORTHO05D000422 2.6e-13 79.0 97 46.4
BcaB03g13440 Brassica carinata HOM05D000578 ORTHO05D000422 3.4e-13 78.6 111 42.3
QL10p050508 Quercus lobata HOM05D000578 ORTHO05D000422 3.4e-13 78.6 98 48.0
MD09G1251100 Malus domestica HOM05D000578 ORTHO05D000422 7.5e-13 77.4 104 51.0
PGSC0003DMG400027017 Solanum tuberosum HOM05D000578 ORTHO05D000422 1.7e-12 76.3 102 50.0
Sopen06g029550 Solanum pennellii HOM05D000578 ORTHO05D000422 2.2e-12 75.9 102 49.0
PGR083G2483 Punica granatum HOM05D000578 ORTHO05D000422 2.9e-12 75.5 105 49.5
Solyc06g073180.3 Solanum lycopersicum HOM05D000578 ORTHO05D000422 2.9e-12 75.5 101 49.5
Lj3A24T18 Lonicera japonica HOM05D000578 ORTHO05D000422 3.7e-12 75.1 122 42.6
Carub.0001s0537 Capsella rubella HOM05D000578 ORTHO05D000422 4.9e-12 74.7 110 45.5
Thhalv10008612m.g Eutrema salsugineum HOM05D000578 ORTHO05D000422 4.9e-12 74.7 97 47.4
Manes.04G044000 Manihot esculenta HOM05D000578 ORTHO05D000422 6.4e-12 74.3 98 50.0
THA.LOC104815856 Tarenaya hassleriana HOM05D000578 ORTHO05D000422 6.4e-12 74.3 101 44.6
AL4G26630 Arabidopsis lyrata HOM05D000578 ORTHO05D000422 8.3e-12 73.9 100 43.0
HanXRQChr01g0023841 Helianthus annuus HOM05D000578 ORTHO05D000422 8.3e-12 73.9 105 47.6
PSO675G3079 Papaver somniferum HOM05D000578 ORTHO05D000422 8.3e-12 73.9 119 44.5
PSO732G0318 Papaver somniferum HOM05D000578 ORTHO05D000422 1.1e-11 73.6 121 44.6
CAN.G65.163 Capsicum annuum HOM05D000578 ORTHO05D000422 1.4e-11 73.2 101 48.5
Peaxi162Scf00180g00710 Petunia axillaris HOM05D000578 ORTHO05D000422 1.9e-11 72.8 121 43.8
BcaB06g28551 Brassica carinata HOM05D000578 ORTHO05D000422 2.4e-11 72.4 102 42.2
CDE02G2732 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 2.4e-11 72.4 99 48.5
AT2G31380 Arabidopsis thaliana HOM05D000578 ORTHO05D000422 5.4e-11 71.2 100 41.0
EL10Ac3g05984 Beta vulgaris HOM05D000578 ORTHO05D000422 5.4e-11 71.2 100 46.0
arahy.Tifrunner.gnm1.ann1.ZT519T Arachis hypogaea HOM05D000578 ORTHO05D000422 7.0e-11 70.9 98 44.9
unitig_0.g2397 Utricularia gibba HOM05D000578 ORTHO05D000422 7.0e-11 70.9 99 45.5
BcaB02g10387 Brassica carinata HOM05D000516 ORTHO05D000409 1.2e-10 70.1 98 40.8
Ah.13g072800 Amaranthus hybridus HOM05D000578 ORTHO05D000422 1.6e-10 69.7 79 48.1
BcaC02g11238 Brassica carinata HOM05D000578 ORTHO05D000422 2.0e-10 69.3 98 40.8
C04p18950 Brassica napus HOM05D000578 ORTHO05D000422 2.0e-10 69.3 98 40.8
BolC4t23425H Brassica oleracea HOM05D000578 ORTHO05D000422 2.0e-10 69.3 98 40.8
Carub.0004s1270 Capsella rubella HOM05D000578 ORTHO05D000422 3.5e-10 68.6 100 41.0
Sp4g13860 Schrenkiella parvula HOM05D000578 ORTHO05D000422 3.5e-10 68.6 99 39.4
Cfa021264 Carpinus fangiana HOM05D000578 ORTHO05D000422 4.6e-10 68.2 58 65.5
A05p14220 Brassica napus HOM05D000578 ORTHO05D000422 6.0e-10 67.8 100 39.0
CARHR125010 Cardamine hirsuta HOM05D000578 ORTHO05D000422 6.0e-10 67.8 101 41.6
CDE09G1223 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 6.0e-10 67.8 99 45.5
A04p24310 Brassica napus HOM05D000578 ORTHO05D000422 1.0e-09 67.0 100 41.0
BraA05t20353Z Brassica rapa HOM05D000578 ORTHO05D000422 1.0e-09 67.0 98 39.8
ATR0743G170 Amborella trichopoda HOM05D000578 ORTHO05D000422 6.6e-09 64.3 105 36.2
BcaC07g42088 Brassica carinata HOM05D000578 ORTHO05D000422 1.1e-08 63.5 97 44.3
A09p67180 Brassica napus HOM05D000578 ORTHO05D000422 1.1e-08 63.5 98 42.9
BraA04t17950Z Brassica rapa HOM05D000578 ORTHO05D000422 1.1e-08 63.5 101 38.6
BraA09t42050Z Brassica rapa HOM05D000578 ORTHO05D000422 1.1e-08 63.5 98 42.9
Thhalv10017169m.g Eutrema salsugineum HOM05D000578 ORTHO05D000422 1.1e-08 63.5 100 38.0
Os04g0493000 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 3.3e-08 62.0 101 45.5
CARHR005560 Cardamine hirsuta HOM05D000578 ORTHO05D000422 4.3e-08 61.6 101 42.6
Zm00001eb184110 Zea mays HOM05D000578 ORTHO05D000422 9.5e-08 60.5 106 39.6
BcaC02g07980 Brassica carinata HOM05D000578 ORTHO05D000422 2.8e-07 58.9 103 36.9
Zm00001eb078770 Zea mays HOM05D000578 ORTHO05D000422 2.8e-07 58.9 97 39.2
Os02g0606200 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 3.6e-07 58.5 116 37.1
C04p61140 Brassica napus HOM05D000578 ORTHO05D000422 4.7e-07 58.2 104 36.5
arahy.Tifrunner.gnm1.ann1.JM5X49 Arachis hypogaea HOM05D000578 ORTHO05D000422 6.2e-07 57.8 76 47.4
BolC4t27599H Brassica oleracea HOM05D000578 ORTHO05D000422 8.0e-07 57.4 105 36.2
Hund12016 Selenicereus undatus HOM05D000578 ORTHO05D000422 8.0e-07 57.4 102 40.2
arahy.Tifrunner.gnm1.ann1.YFE8EZ Arachis hypogaea HOM05D000578 ORTHO05D000422 4.0e-06 55.1 98 40.8


User provided reference genes

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