Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.3e-224 781.9 399 100.0
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.9e-138 496.5 389 67.1
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.8e-131 472.2 386 63.7
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.7e-129 465.3 361 67.0
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 5.0e-123 445.3 371 61.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.1e-122 444.1 312 67.9
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.5e-122 443.0 368 62.2
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.3e-122 442.6 368 62.0
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 9.5e-122 441.0 371 60.9
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 9.5e-122 441.0 367 61.0
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.2e-121 440.7 360 64.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.2e-121 440.7 367 60.5
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.8e-121 439.5 368 62.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.8e-121 439.5 314 70.4
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 3.6e-121 439.1 366 62.8
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.1e-121 438.3 331 64.0
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.0e-120 437.6 302 69.2
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.0e-120 437.6 323 65.9
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.3e-120 436.4 345 63.8
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 5.2e-120 435.3 323 64.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.4e-119 432.6 299 70.2
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.4e-119 432.2 307 66.4
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.7e-119 431.8 331 62.8
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 4.9e-118 428.7 311 67.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.1e-117 427.6 305 65.9
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.4e-117 427.2 358 59.8
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.8e-117 426.8 335 63.3
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.8e-117 426.8 283 68.9
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 7.0e-117 424.9 303 67.7
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 7.0e-117 424.9 301 66.1
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 7.0e-117 424.9 323 64.1
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.0e-116 423.3 314 64.6
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 4.6e-116 422.2 295 67.5
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 5.9e-116 421.8 344 59.6
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 7.8e-116 421.4 331 60.7
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 7.8e-116 421.4 306 67.6
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.0e-115 421.0 331 61.9
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.3e-115 420.6 343 60.9
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.3e-115 419.9 331 61.9
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 5.0e-115 418.7 335 62.1
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.5e-114 417.2 300 66.0
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.9e-114 416.8 302 66.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.9e-114 416.8 363 60.1
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.5e-114 416.4 361 59.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.5e-114 416.4 363 59.2
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.3e-114 416.0 332 62.3
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.3e-114 416.0 300 65.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 4.3e-114 415.6 316 63.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.6e-114 415.2 298 65.8
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.1e-113 413.3 331 61.3
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.8e-113 412.9 327 63.6
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 6.2e-113 411.8 323 60.4
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.4e-112 410.6 297 65.3
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.3e-112 409.8 298 64.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.2e-112 408.7 331 60.4
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 5.2e-112 408.7 289 68.5
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 6.8e-112 408.3 332 59.3
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 8.9e-112 407.9 278 69.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-111 407.5 326 60.4
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.2e-111 407.5 306 62.7
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.5e-111 407.1 352 56.2
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 2.6e-111 406.4 322 62.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.4e-111 405.6 445 51.0
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-110 404.1 299 65.9
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.7e-110 402.5 299 65.6
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.7e-110 402.5 299 65.6
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 6.4e-110 401.7 279 71.0
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-109 400.6 340 58.8
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.4e-109 400.6 290 66.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 7.0e-109 398.3 286 66.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 9.2e-109 397.9 318 60.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.0e-108 396.7 300 61.0
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.7e-108 396.4 318 60.4
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 3.5e-108 396.0 353 56.7
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 7.8e-108 394.8 334 57.5
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.3e-107 394.0 335 59.1
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.7e-107 393.7 274 68.2
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.3e-107 393.3 325 60.3
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 5.0e-107 392.1 334 58.7
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 6.6e-107 391.7 334 57.2
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.5e-106 389.8 282 66.0
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.5e-106 389.8 295 66.8
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 5.6e-106 388.7 334 57.5
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 7.3e-106 388.3 312 59.0
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 9.5e-106 387.9 308 60.7
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.2e-105 387.5 301 61.1
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.8e-105 386.3 333 57.1
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.8e-105 386.3 307 60.6
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.6e-105 386.0 323 58.8
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 6.2e-105 385.2 323 57.9
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 8.1e-105 384.8 271 66.4
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-104 384.0 297 61.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-104 384.0 358 55.9
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.4e-104 384.0 297 61.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.8e-104 383.6 297 61.6
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 6.8e-104 381.7 344 57.8
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 8.9e-104 381.3 307 60.9
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 8.9e-104 381.3 307 60.9
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 8.9e-104 381.3 279 66.7
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 2.0e-103 380.2 300 60.3
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 3.4e-103 379.4 274 64.6
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 4.4e-103 379.0 316 58.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 6.4e-102 375.2 316 57.3
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.5e-98 364.0 307 58.6
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 4.3e-98 362.5 290 62.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.8e-96 357.1 322 57.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 4.1e-93 345.9 307 56.4
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.8e-89 333.2 271 59.4
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.0e-87 327.0 309 53.4
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.3e-86 324.3 252 62.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.1e-85 321.2 286 54.9
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.4e-85 318.9 234 67.9
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 5.4e-85 318.9 307 50.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 8.7e-83 311.6 286 54.5
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.1e-82 311.2 238 63.4
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.8e-80 303.9 287 56.1
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.4e-79 299.7 317 50.5
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.1e-76 290.4 277 52.7
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 7.9e-76 288.5 238 58.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.7e-75 287.3 303 53.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-73 280.4 218 64.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.6e-73 279.6 266 53.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.4e-69 267.7 200 61.0
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 8.7e-67 258.5 200 65.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 9.6e-66 255.0 203 64.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.4e-61 241.1 176 63.1
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.2e-53 213.0 197 55.3
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.6e-49 201.1 131 68.7
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.6e-44 184.5 191 50.8
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.2e-41 174.1 338 33.4
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.1e-40 169.9 155 56.1
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.7e-36 157.1 296 33.4
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.5e-29 134.8 76 81.6
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 4.7e-28 129.8 323 28.5
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.1e-28 129.4 100 61.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.1e-24 118.6 96 55.2
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 5.3e-24 116.3 75 65.3
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 7.0e-24 115.9 97 49.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.3e-19 100.9 78 69.2
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 4.8e-17 93.2 104 45.2
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.9e-15 86.3 95 51.6


User provided reference genes

Program Settings