Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.5e-86 322.8 160 100.0
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.3e-66 256.5 134 95.5
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 6.6e-66 254.2 136 92.6
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 6.8e-63 244.2 131 91.6
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.4e-60 236.5 134 86.6
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.2e-59 233.4 134 86.6
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.6e-59 233.0 134 85.1
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 2.1e-59 232.6 134 85.8
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 6.0e-59 231.1 134 82.8
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 6.0e-59 231.1 134 82.8
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.9e-58 228.4 134 82.8
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 5.1e-58 228.0 135 83.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 8.6e-58 227.3 134 80.6
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 2.8e-56 222.2 177 67.2
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 8.1e-56 220.7 130 80.8
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.1e-55 220.3 130 80.0
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 4.0e-55 218.4 130 80.0
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.2e-54 216.9 130 79.2
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.2e-54 216.9 129 79.8
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.5e-54 216.5 126 83.3
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 1.5e-54 216.5 129 80.6
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.6e-54 215.7 129 81.4
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.4e-54 215.3 128 78.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 5.8e-54 214.5 124 81.5
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 5.8e-54 214.5 124 81.5
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 5.8e-54 214.5 136 75.7
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 7.5e-54 214.2 128 78.9
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 7.5e-54 214.2 126 81.7
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 7.5e-54 214.2 131 79.4
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.7e-53 213.0 128 80.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 3.7e-53 211.8 128 79.7
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 3.7e-53 211.8 128 79.7
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 4.9e-53 211.5 129 79.8
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.9e-53 211.5 126 81.7
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.9e-53 211.5 126 81.0
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 8.3e-53 210.7 129 79.1
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-52 210.3 131 77.9
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.4e-52 209.9 124 79.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.4e-52 209.9 124 79.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.4e-52 209.9 128 78.9
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.9e-52 209.5 130 76.9
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.9e-52 209.5 124 79.0
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.4e-52 209.1 124 79.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.4e-52 209.1 128 78.9
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.2e-52 208.8 124 79.0
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.1e-52 208.4 129 77.5
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.1e-52 208.4 128 77.3
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 4.1e-52 208.4 127 77.2
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 5.4e-52 208.0 128 78.9
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 5.4e-52 208.0 128 78.9
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.1e-52 207.6 131 77.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.2e-51 206.8 130 76.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.6e-51 206.5 124 79.8
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-51 206.5 128 78.1
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-51 206.5 128 78.1
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.6e-51 206.5 129 76.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.6e-51 206.5 129 76.7
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.6e-51 206.5 129 76.7
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.7e-51 205.7 131 76.3
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.5e-51 205.3 124 79.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 3.5e-51 205.3 128 75.8
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.6e-51 204.9 129 76.7
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 4.6e-51 204.9 147 68.7
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 6.0e-51 204.5 124 79.0
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 6.0e-51 204.5 132 74.2
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 7.8e-51 204.1 118 81.4
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 7.8e-51 204.1 124 76.6
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.0e-50 203.8 118 81.4
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.7e-50 203.0 129 75.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.3e-50 202.6 126 75.4
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.0e-50 202.2 128 75.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.1e-50 201.4 128 77.3
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.1e-50 201.4 128 74.2
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 5.1e-50 201.4 128 75.0
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 8.6e-50 200.7 125 74.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 8.6e-50 200.7 125 77.6
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 8.6e-50 200.7 128 74.2
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.1e-49 200.3 131 74.8
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.1e-49 200.3 128 74.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.1e-49 200.3 129 74.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.5e-49 199.9 130 73.1
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.5e-49 199.9 128 74.2
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.5e-49 199.9 128 75.8
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.5e-49 199.9 129 73.6
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.5e-49 199.1 129 76.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.5e-49 199.1 129 76.0
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 5.6e-49 198.0 124 75.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.6e-48 196.4 126 73.0
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.8e-48 195.7 124 74.2
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 3.6e-48 195.3 128 73.4
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 6.2e-48 194.5 126 73.8
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 8.1e-48 194.1 126 73.8
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 8.1e-48 194.1 126 73.8
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.1e-47 193.7 129 71.3
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.1e-47 193.7 126 73.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.4e-47 193.4 126 73.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.4e-47 193.4 127 73.2
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.4e-47 193.4 124 73.4
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.4e-47 192.6 126 73.8
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.4e-47 192.6 126 73.8
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.4e-47 192.6 126 73.8
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 5.2e-47 191.4 126 73.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 5.2e-47 191.4 126 73.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 5.2e-47 191.4 126 73.0
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 5.8e-46 188.0 129 72.9
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 7.6e-46 187.6 124 74.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.3e-45 186.8 127 72.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.7e-45 186.4 124 71.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.4e-44 183.3 124 69.4
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.5e-43 178.7 125 70.4
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.7e-42 176.4 109 74.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.5e-41 172.6 103 79.6
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 2.9e-37 159.1 129 64.3
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 4.2e-36 155.2 116 63.8
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 7.8e-35 151.0 103 68.0
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.5e-33 146.0 112 64.3
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.4e-31 139.4 84 81.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.8e-30 134.8 82 79.3
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.7e-29 133.3 86 76.7
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 3.2e-28 129.0 102 62.7
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 3.0e-26 122.5 79 77.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 9.6e-25 117.5 88 61.4
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.4e-23 113.6 89 62.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.0e-23 110.9 129 50.4
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.3e-18 97.1 96 50.0
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.1e-18 95.1 69 66.7
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-17 93.6 69 66.7
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.9e-17 93.2 61 75.4
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.8e-16 88.6 56 78.6
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.0e-13 80.9 97 45.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 4.9e-13 78.6 116 45.7
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.1e-11 73.2 58 60.3
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 4.6e-11 72.0 54 68.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.3e-10 69.7 60 66.7
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 5.7e-09 65.1 60 63.3
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.7e-09 64.3 60 63.3
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.7e-09 64.3 60 65.0
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.3e-08 63.9 59 45.8


User provided reference genes

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