Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.3e-54 216.1 107 100.0
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.6e-31 139.4 118 63.6
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 3.3e-13 78.6 53 71.7
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 5.6e-13 77.8 53 69.8
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 5.6e-13 77.8 53 69.8
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 5.6e-13 77.8 53 69.8
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 5.6e-13 77.8 53 69.8
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.6e-13 77.8 53 69.8
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 7.4e-13 77.4 53 69.8
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 9.6e-13 77.0 53 69.8
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.6e-13 77.0 53 69.8
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 9.6e-13 77.0 53 69.8
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.6e-12 76.3 53 69.8
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.1e-12 75.9 53 67.9
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 2.1e-12 75.9 86 48.8
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.8e-12 75.5 53 66.0
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 3.7e-12 75.1 49 73.5
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 3.7e-12 75.1 53 67.9
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 3.7e-12 75.1 53 67.9
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 3.7e-12 75.1 53 66.0
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 3.7e-12 75.1 53 66.0
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 69.8
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 4.8e-12 74.7 49 71.4
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 4.8e-12 74.7 53 66.0
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 6.2e-12 74.3 53 67.9
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 6.2e-12 74.3 53 67.9
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 6.2e-12 74.3 53 67.9
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 6.2e-12 74.3 53 67.9
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 6.2e-12 74.3 53 66.0
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 6.2e-12 74.3 53 67.9
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 8.2e-12 73.9 53 66.0
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 8.2e-12 73.9 53 67.9
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 8.2e-12 73.9 49 69.4
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 8.2e-12 73.9 53 66.0
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 64.2
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 66.0
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.1e-11 73.6 49 69.4
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 64.2
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 64.2
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.1e-11 73.6 49 69.4
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 64.2
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.1e-11 73.6 49 69.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 66.0
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.1e-11 73.6 49 69.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.1e-11 73.6 53 64.2
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.4e-11 73.2 49 69.4
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.4e-11 73.2 49 69.4
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.4e-11 73.2 49 69.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.4e-11 73.2 53 64.2
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.4e-11 73.2 53 64.2
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.4e-11 73.2 53 64.2
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.4e-11 73.2 53 66.0
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 1.4e-11 73.2 53 64.2
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.8e-11 72.8 49 67.3
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 2.4e-11 72.4 49 67.3
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 2.4e-11 72.4 49 67.3
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.4e-11 72.4 49 69.4
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 2.4e-11 72.4 49 67.3
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 3.1e-11 72.0 53 64.2
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 3.1e-11 72.0 53 64.2
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 3.1e-11 72.0 44 70.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 3.1e-11 72.0 49 67.3
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 3.1e-11 72.0 53 64.2
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 4.0e-11 71.6 49 67.3
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 4.0e-11 71.6 49 67.3
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 4.0e-11 71.6 36 86.1
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.0e-11 71.6 53 64.2
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 5.3e-11 71.2 49 67.3
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 5.3e-11 71.2 53 64.2
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 5.3e-11 71.2 53 62.3
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 6.9e-11 70.9 53 62.3
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 9.0e-11 70.5 53 62.3
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 9.0e-11 70.5 53 62.3
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 9.0e-11 70.5 54 59.3
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.2e-10 70.1 49 65.3
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.2e-10 70.1 53 66.0
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.5e-10 69.7 53 60.4
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-10 69.7 53 60.4
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-10 69.7 53 60.4
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-10 69.7 53 60.4
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.5e-10 69.7 53 64.2
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.5e-10 69.7 53 64.2
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.4e-10 68.6 36 86.1
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 5.8e-10 67.8 52 57.7
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 7.6e-10 67.4 53 58.5
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 7.6e-10 67.4 53 58.5
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.0e-09 67.0 36 83.3
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.7e-09 66.2 63 57.1
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 2.2e-09 65.9 38 73.7
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 2.9e-09 65.5 53 52.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.9e-09 65.5 71 47.9
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.8e-09 65.1 53 54.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 8.4e-09 63.9 53 54.7
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.4e-08 63.2 76 48.7
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.4e-08 63.2 76 48.7
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 9.3e-08 60.5 46 63.0
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.6e-07 59.7 49 44.9


User provided reference genes

Program Settings